8V5V image
Deposition Date 2023-12-01
Release Date 2024-12-18
Last Version Date 2024-12-18
Entry Detail
PDB ID:
8V5V
Keywords:
VIRAL PROTEIN
Title:
Structure of a SARS-CoV-2 spike S2 subunit in a pre-fusion, open conformation
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Tequatrovirus T4 (Taxon ID: 10665)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.93 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8V5V validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S2,Fibritin
Gene (Uniprot):S, wac
Mutations:F817P,A892P,A899P,A942P,V987P,Y707C,T883C,Y788C,A876C
Chain IDs:A (auth: G), B (auth: E), C (auth: F)
Chain Length:108
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2, Tequatrovirus T4
UniProt ID:P0DTC2,P10104 Pfam ID:PF01601
Polymer Type:polypeptide(L)
Molecule:Variable domain of the light chain from the human antibody 6C10
Chain IDs:D (auth: d), E (auth: g), H (auth: e)
Chain Length:108
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Variable domain of the heavy chain from the human antibody 6C10
Chain IDs:F (auth: f), G (auth: c), I (auth: b)
Chain Length:125
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Structure of a SARS-CoV-2 spike S2 subunit in a pre-fusion, open conformation
To Be Published ? ? ? (?)
Primary Citation of related structures
8V5V