8V42 image
Entry Detail
PDB ID:
8V42
Keywords:
Title:
Structure of Human Vaccinia-related Kinase 1 (VRK1) Bound to ACH000400
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-28
Release Date:
2024-09-04
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein kinase VRK1
Mutations:K34A,K35A,E36A,E212A,K214A,E215A,E292A,K293A,K295A
Chain IDs:A, B, C, D
Chain Length:364
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Novel Dihydropteridinone Derivatives As Potent Inhibitors of the Understudied Human Kinases Vaccinia-Related Kinase 1 and Casein Kinase 1 delta / epsilon.
J.Med.Chem. 67 8609 8629 (2024)
PMID: 38780468 DOI: 10.1021/acs.jmedchem.3c02250

Abstact

Vaccinia-related kinase 1 (VRK1) and the δ and ε isoforms of casein kinase 1 (CK1) are linked to various disease-relevant pathways. However, the lack of tool compounds for these kinases has significantly hampered our understanding of their cellular functions and therapeutic potential. Here, we describe the structure-based development of potent inhibitors of VRK1, a kinase highly expressed in various tumor types and crucial for cell proliferation and genome integrity. Kinome-wide profiling revealed that our compounds also inhibit CK1δ and CK1ε. We demonstrate that dihydropteridinones 35 and 36 mimic the cellular outcomes of VRK1 depletion. Complementary studies with existing CK1δ and CK1ε inhibitors suggest that these kinases may play overlapping roles in cell proliferation and genome instability. Together, our findings highlight the potential of VRK1 inhibition in treating p53-deficient tumors and possibly enhancing the efficacy of existing cancer therapies that target DNA stability or cell division.

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