8V3G image
Entry Detail
PDB ID:
8V3G
EMDB ID:
Title:
Cryo-EM structure of the KCa2.2 channel with inhibitor UCL 1684.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-27
Release Date:
2025-04-23
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Small conductance calcium-activated potassium channel protein 2
Chain IDs:A, B, C, D
Chain Length:361
Number of Molecules:4
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Calmodulin-1
Chain IDs:E, F, G, H
Chain Length:146
Number of Molecules:4
Biological Source:Rattus norvegicus
Primary Citation
Cryo-EM structures of the small-conductance Ca 2+ -activated K Ca 2.2 channel.
Nat Commun 16 3690 3690 (2025)
PMID: 40246884 DOI: 10.1038/s41467-025-59061-1

Abstact

Small-conductance Ca2+-activated K+ (KCa2.1-KCa2.3) channels modulate neuronal and cardiac excitability. We report cryo-electron microscopy structures of the KCa2.2 channel in complex with calmodulin and Ca2+, alone or bound to two small molecule inhibitors, at 3.18, 3.50, 2.99 and 2.97 angstrom resolution, respectively. Extracellular S3-S4 loops in β-hairpin configuration form an outer canopy over the pore with an aromatic box at the canopy's center. Each S3-S4 β-hairpin is tethered to the selectivity filter in the neighboring subunit by inter-subunit hydrogen bonds. This hydrogen bond network flips the aromatic residue (Tyr362) in the filter's GYG signature by 180°, causing the outer selectivity filter to widen and water to enter the filter. Disruption of the tether by a mutation narrows the outer selectivity filter, realigns Tyr362 to the position seen in other K+ channels, and significantly increases unitary conductance. UCL1684, a mimetic of the bee venom peptide apamin, sits atop the canopy and occludes the opening in the aromatic box. AP14145, an analogue of a therapeutic for atrial fibrillation, binds in the central cavity below the selectivity filter and induces closure of the inner gate. These structures provide a basis for understanding the small unitary conductance and pharmacology of KCa2.x channels.

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