8V2V image
Deposition Date 2023-11-23
Release Date 2024-09-25
Last Version Date 2024-09-25
Entry Detail
PDB ID:
8V2V
Keywords:
Title:
Solution NMR structure of recifin A [Y6F]
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with acceptable covalent geometry
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Recifin A
Mutations:Y6F
Chain IDs:A
Chain Length:41
Number of Molecules:1
Biological Source:Axinella sp. 1 TF-2017
Ligand Molecules
Primary Citation
Picking the tyrosine-lock: chemical synthesis of the tyrosyl-DNA phosphodiesterase I inhibitor recifin A and analogues.
Chem Sci 15 13227 13233 (2024)
PMID: 39183914 DOI: 10.1039/d4sc01976h

Abstact

The peptide recifin A is the inaugural member of the structurally intriguing new fold referred to as a tyrosine-lock. Its central four stranded β-sheet is stabilized by a unique arrangement in which three disulfide bonds and their interconnecting backbone form a ring that wraps around one of the strands, resulting in a Tyr side chain being buried in the molecular core. Here we aimed to establish a synthetic route to this complex class of natural products. Full length recifin A was successfully generated through native chemical ligation chemistry joining two 21 amino acid residue fragments. Surprisingly, reduced linear recifin A readily adopts the correct, topologically-complex fold via random oxidation of the cysteines, suggesting it is highly energetically favored. Utilizing our synthetic strategy, we generated five recifin A analogues to investigate the structural role of the central Tyr residue and provide the first insights into the structure activity relationship of recifin A towards its cancer target tyrosyl-DNA phosphodiesterase I.

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Primary Citation of related structures