8V2T image
Entry Detail
PDB ID:
8V2T
Title:
Phosphoheptose isomerase GMHA from Burkholderia pseudomallei bound to inhibitor Mut148591
Biological Source:
PDB Version:
Deposition Date:
2023-11-23
Release Date:
2023-12-06
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.16
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phosphoheptose isomerase
Chain IDs:A
Chain Length:219
Number of Molecules:1
Biological Source:Burkholderia pseudomallei 1106a
Primary Citation
Potentiating Activity of GmhA Inhibitors on Gram-Negative Bacteria.
J.Med.Chem. 67 6610 6623 (2024)
PMID: 38598312 DOI: 10.1021/acs.jmedchem.4c00037

Abstact

Inhibition of the biosynthesis of bacterial heptoses opens novel perspectives for antimicrobial therapies. The enzyme GmhA responsible for the first committed biosynthetic step catalyzes the conversion of sedoheptulose 7-phosphate into d-glycero-d-manno-heptose 7-phosphate and harbors a Zn2+ ion in the active site. A series of phosphoryl- and phosphonyl-substituted derivatives featuring a hydroxamate moiety were designed and prepared from suitably protected ribose or hexose derivatives. High-resolution crystal structures of GmhA complexed to two N-formyl hydroxamate inhibitors confirmed the binding interactions to a central Zn2+ ion coordination site. Some of these compounds were found to be nanomolar inhibitors of GmhA. While devoid of HepG2 cytotoxicity and antibacterial activity of their own, they demonstrated in vitro lipopolysaccharide heptosylation inhibition in Enterobacteriaceae as well as the potentiation of erythromycin and rifampicin in a wild-type Escherichia coli strain. These inhibitors pave the way for a novel treatment of Gram-negative infections.

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