8V2E image
Entry Detail
PDB ID:
8V2E
Keywords:
Title:
Crystal structure of B055 scaffold boost immunogen in complex with a mature 10E8 Fab
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-11-22
Release Date:
2024-06-12
Method Details:
Experimental Method:
Resolution:
2.62 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antibody 10E8 FAB HEAVY CHAIN
Chain IDs:A, D
Chain Length:234
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody 10E8 FAB LIGHT CHAIN
Chain IDs:B, E
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:10E8 EPITOPE SCAFFOLD B055
Chain IDs:C, F
Chain Length:188
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation

Abstact

A key barrier to the development of vaccines that induce broadly neutralizing antibodies (bnAbs) against human immunodeficiency virus (HIV) and other viruses of high antigenic diversity is the design of priming immunogens that induce rare bnAb-precursor B cells. The high neutralization breadth of the HIV bnAb 10E8 makes elicitation of 10E8-class bnAbs desirable; however, the recessed epitope within gp41 makes envelope trimers poor priming immunogens and requires that 10E8-class bnAbs possess a long heavy chain complementarity determining region 3 (HCDR3) with a specific binding motif. We developed germline-targeting epitope scaffolds with affinity for 10E8-class precursors and engineered nanoparticles for multivalent display. Scaffolds exhibited epitope structural mimicry and bound bnAb-precursor human naive B cells in ex vivo screens, protein nanoparticles induced bnAb-precursor responses in stringent mouse models and rhesus macaques, and mRNA-encoded nanoparticles triggered similar responses in mice. Thus, germline-targeting epitope scaffold nanoparticles can elicit rare bnAb-precursor B cells with predefined binding specificities and HCDR3 features.

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