8V1V image
Deposition Date 2023-11-21
Release Date 2025-07-02
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8V1V
Keywords:
LIGASE/DNA
Title:
Human DNA Ligase I F872L bound to adenylated nicked DNA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
8V1V validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA ligase 1
Gene (Uniprot):LIG1
Mutations:F872L
Chain IDs:A
Chain Length:647
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18858 Pfam ID:PF04675, PF01068, PF04679 EC:6.5.1.1
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3')
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3')
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*CP*CP*GP*AP*(OHU)P*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
Chain IDs:D
Chain Length:18
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
AMP
GOL
MES
NA
Primary Citation
Human DNA Ligase I F872L bound to adenylated nicked DNA
To Be Published ? ? ? (?)
Primary Citation of related structures
8V1V