ISDA: 8V1U

Deposition Date 2023-11-21

Release Date 2025-07-02

Last Version Date 2025-07-02

Entry Detail

PDB ID:

8V1U

Keywords:

LIGASE/DNA

Title:

Human DNA Ligase I F872A bound to adenylated nicked DNA with a 5' terminal ribonucleotide

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.00 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA ligase 1
Gene (Uniprot):LIG1
Mutagens:F872A
Chain IDs:A
Chain Length:647
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P18858 Pfam ID:PF04675, PF01068, PF04679 EC:6.5.1.1

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3')
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide/polyribonucleotide hybrid
Molecule:DNA/RNA (5'-R(P*G)-D(P*TP*CP*GP*GP*AP*C)-3')
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
Chain IDs:D
Chain Length:18
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules