8V14 image
Deposition Date 2023-11-19
Release Date 2024-01-31
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8V14
Title:
Structure of NRAP-1 and its role in NMDAR signaling
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NMDA receptor auxiliary protein
Gene (Uniprot):nrap-1
Chain IDs:A, B
Chain Length:168
Number of Molecules:2
Biological Source:Caenorhabditis elegans
Ligand Molecules
Primary Citation
Mechanistic and structural studies reveal NRAP-1-dependent coincident activation of NMDARs.
Cell Rep 43 113694 113694 (2024)
PMID: 38265937 DOI: 10.1016/j.celrep.2024.113694

Abstact

N-methyl-D-aspartate (NMDA)-type ionotropic glutamate receptors have essential roles in neurotransmission and synaptic plasticity. Previously, we identified an evolutionarily conserved protein, NRAP-1, that is required for NMDA receptor (NMDAR) function in C. elegans. Here, we demonstrate that NRAP-1 was sufficient to gate NMDARs and greatly enhanced glutamate-mediated NMDAR gating, thus conferring coincident activation properties to the NMDAR. Intriguingly, vertebrate NMDARs-and chimeric NMDARs where the amino-terminal domain (ATD) of C. elegans NMDARs was replaced by the ATD from vertebrate receptors-were spontaneously active when ectopically expressed in C. elegans neurons. Thus, the ATD is a primary determinant of NRAP-1- and glutamate-mediated gating of NMDARs. We determined the crystal structure of NRAP-1 at 1.9-Å resolution, which revealed two distinct domains positioned around a central low-density lipoprotein receptor class A domain. The NRAP-1 structure, combined with chimeric and mutational analyses, suggests a model where the three NRAP-1 domains work cooperatively to modify the gating of NMDARs.

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