8V13 image
Deposition Date 2023-11-19
Release Date 2025-01-29
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8V13
Title:
Crystal structure of Black mamba toxin in complex with Centi-SNX-B03 antibody
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Centi-SNX-B03 Fab heavy chain
Chain IDs:A (auth: H), D (auth: h)
Chain Length:230
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centi-SNX-B03 Fab light chain
Chain IDs:B (auth: L), E (auth: l)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Short neurotoxin 1
Chain IDs:C (auth: T), F (auth: t)
Chain Length:60
Number of Molecules:2
Biological Source:Dendraspis polylepis polylepis
Ligand Molecules
Primary Citation
Snake venom protection by a cocktail of varespladib and broadly neutralizing human antibodies.
Cell 188 3117 3134.e11 (2025)
PMID: 40318633 DOI: 10.1016/j.cell.2025.03.050

Abstact

Snake envenomation is a neglected tropical disease, with 600 species causing over 100,000 deaths and 300,000 permanent disabilities in humans annually. Broadly neutralizing antibodies and broad chemical inhibitors have been proposed as solutions, but how to develop a therapeutically effective cocktail and the number of required components have been unclear. To address this gap, we iteratively recovered two broadly neutralizing antivenom antibodies from the memory B cells of a hyperimmune human donor with extensive snake venom exposure. The antibodies recognized conserved neutralizing epitopes on prevalent long and short snake neurotoxins, with crystal structures revealing antibody mimicry of the interfaces between these neurotoxins and their host target, the nicotinic acetylcholine receptor. We combined and tested these antibodies and the phospholipase inhibitor varespladib. A 3-component cocktail rescued animals from whole-venom challenge of all species in a 19-member WHO Category 1 and Category 2 elapid diversity set, with complete protection against most snakes observed.

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Primary Citation of related structures