8V11 image
Deposition Date 2023-11-19
Release Date 2024-05-15
Last Version Date 2024-06-12
Entry Detail
PDB ID:
8V11
Keywords:
Title:
Structure of a Saccharomyces cerevisiae Ipl1 peptide Bound to dwarf Ndc80 complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.95 Å
R-Value Free:
0.32
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NDC80
Gene (Uniprot):NDC80
Chain IDs:A, E
Chain Length:272
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ipl1/Nuf2 chimera protein
Gene (Uniprot):NUF2
Chain IDs:B, F
Chain Length:227
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC24
Gene (Uniprot):SPC24
Chain IDs:C, G
Chain Length:99
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC25
Gene (Uniprot):SPC25
Chain IDs:D, H
Chain Length:114
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
A communication hub for phosphoregulation of kinetochore-microtubule attachment.
Curr.Biol. 34 2308 2318.e6 (2024)
PMID: 38776904 DOI: 10.1016/j.cub.2024.04.067

Abstact

The Mps1 and Aurora B kinases regulate and monitor kinetochore attachment to spindle microtubules during cell division, ultimately ensuring accurate chromosome segregation. In yeast, the critical spindle attachment components are the Ndc80 and Dam1 complexes (Ndc80c and DASH/Dam1c, respectively). Ndc80c is a 600-Å-long heterotetramer that binds microtubules through a globular "head" at one end and centromere-proximal kinetochore components through a globular knob at the other end. Dam1c is a heterodecamer that forms a ring of 16-17 protomers around the shaft of the single kinetochore microtubule in point-centromere yeast. The ring coordinates the approximately eight Ndc80c rods per kinetochore. In published work, we showed that a site on the globular "head" of Ndc80c, including residues from both Ndc80 and Nuf2, binds a bipartite segment in the long C-terminal extension of Dam1. Results reported here show, both by in vitro binding experiments and by crystal structure determination, that the same site binds a conserved segment in the long N-terminal extension of Mps1. It also binds, less tightly, a conserved segment in the N-terminal extension of Ipl1 (yeast Aurora B). Together with results from experiments in yeast cells and from biochemical assays reported in two accompanying papers, the structures and graded affinities identify a communication hub for ensuring uniform bipolar attachment and for signaling anaphase onset.

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Primary Citation of related structures
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