8V0E image
Deposition Date 2023-11-17
Release Date 2024-09-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8V0E
Keywords:
Title:
ANK repeat of MIB1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase MIB1
Gene (Uniprot):MIB1
Chain IDs:A, B
Chain Length:386
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Unidentified MIB1 peptide
Chain IDs:C (auth: D)
Chain Length:5
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural requirements for activity of Mind bomb1 in Notch signaling.
Structure 32 1667 1676.e5 (2024)
PMID: 39121852 DOI: 10.1016/j.str.2024.07.011

Abstact

Mind bomb 1 (MIB1) is a RING E3 ligase that ubiquitinates Notch ligands, a necessary step for induction of Notch signaling. The structural basis for binding of the JAG1 ligand by the N-terminal region of MIB1 is known, yet how the ankyrin (ANK) and RING domains of MIB1 cooperate to catalyze ubiquitin transfer from E2∼Ub to Notch ligands remains unclear. Here, we show that the third RING domain and adjacent coiled coil region (ccRING3) drive MIB1 dimerization and that MIB1 ubiquitin transfer activity relies solely on ccRING3. We report X-ray crystal structures of a UbcH5B-ccRING3 complex and the ANK domain. Directly tethering the MIB1 N-terminal region to ccRING3 forms a minimal MIB1 protein sufficient to induce a Notch response in receiver cells and rescue mib knockout phenotypes in flies. Together, these studies define the functional elements of an E3 ligase needed for ligands to induce a Notch signaling response.

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Primary Citation of related structures