8UXX image
Deposition Date 2023-11-11
Release Date 2024-01-31
Last Version Date 2024-03-20
Entry Detail
PDB ID:
8UXX
Title:
Arp2/3 branch junction complex, BeFx state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 3
Gene (Uniprot):act2
Chain IDs:A
Chain Length:427
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2
Gene (Uniprot):arp2
Chain IDs:B
Chain Length:390
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 1
Gene (Uniprot):arc1
Chain IDs:C
Chain Length:377
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 2
Gene (Uniprot):arc2
Chain IDs:D
Chain Length:317
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 3
Gene (Uniprot):arc3
Chain IDs:E
Chain Length:174
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 4
Gene (Uniprot):arc4
Chain IDs:F
Chain Length:168
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 5
Gene (Uniprot):arc5
Chain IDs:G
Chain Length:152
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Chain IDs:H, I, J (auth: M), K (auth: N), L (auth: O), M (auth: P), N (auth: Q), O (auth: R)
Chain Length:377
Number of Molecules:8
Biological Source:Oryctolagus cuniculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC H HIS modified residue
Primary Citation
Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Nat Commun 15 2059 2059 (2024)
PMID: 38448439 DOI: 10.1038/s41467-024-46179-x

Abstact

Arp2/3 complex nucleates branched actin filaments for cell and organelle movements. Here we report a 2.7 Å resolution cryo-EM structure of the mature branch junction formed by S. pombe Arp2/3 complex that provides details about interactions with both mother and daughter filaments. We determine a second structure at 3.2 Å resolution with the phosphate analog BeFx bound with ADP to Arp3 and ATP bound to Arp2. In this ADP-BeFx transition state the outer domain of Arp3 is rotated 2° toward the mother filament compared with the ADP state and makes slightly broader contacts with actin in both the mother and daughter filaments. Thus, dissociation of Pi from the ADP-Pi transition state reduces the interactions of Arp2/3 complex with the actin filaments and may contribute to the lower mechanical stability of mature branch junctions with ADP bound to the Arps. Our structures also reveal that the mother filament in contact with Arp2/3 complex is slightly bent and twisted, consistent with the preference of Arp2/3 complex binding curved actin filaments. The small degree of twisting constrains models of actin filament mechanics.

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Primary Citation of related structures