8UTI image
Entry Detail
PDB ID:
8UTI
EMDB ID:
Keywords:
Title:
Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-10-31
Release Date:
2024-11-06
Method Details:
Experimental Method:
Resolution:
3.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:25S rRNA
Chain IDs:A
Chain Length:3394
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25-A
Chain IDs:OA (auth: AA)
Chain Length:108
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:B
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:5.8S rRNA
Chain IDs:C
Chain Length:158
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:Messenger RNA (5'-R(P*AP*AP*UP*AP*AP*UP*GP*AP*AP*AP*A)-3')
Chain IDs:D
Chain Length:10
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:18S rRNA
Chain IDs:H (auth: E)
Chain Length:1800
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L2-A
Chain IDs:PA (auth: LD)
Chain Length:58
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:QA (auth: LE)
Chain Length:96
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4-A
Chain IDs:RA (auth: LF)
Chain Length:361
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L5
Chain IDs:SA (auth: LG)
Chain Length:294
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6-B
Chain IDs:TA (auth: LH)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7-A
Chain IDs:UA (auth: LI)
Chain Length:112
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8-A
Chain IDs:VA (auth: LJ)
Chain Length:233
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9-A
Chain IDs:WA (auth: LK)
Chain Length:99
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L10
Chain IDs:XA (auth: LL)
Chain Length:218
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11-B
Chain IDs:YA (auth: LM)
Chain Length:169
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13-A
Chain IDs:ZA (auth: LN)
Chain Length:193
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14-A
Chain IDs:AB (auth: LO)
Chain Length:52
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L15-A
Chain IDs:BB (auth: LP)
Chain Length:203
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L16-A
Chain IDs:CB (auth: LQ)
Chain Length:103
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17-A
Chain IDs:DB (auth: LR)
Chain Length:183
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18-A
Chain IDs:EB (auth: LS)
Chain Length:185
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19-A
Chain IDs:FB (auth: LT)
Chain Length:188
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L20-A
Chain IDs:GB (auth: LU)
Chain Length:171
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21-A
Chain IDs:HB (auth: LV)
Chain Length:159
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L22-A
Chain IDs:IB (auth: LW)
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23-A
Chain IDs:JB (auth: LX)
Chain Length:136
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L24-A
Chain IDs:KB (auth: LY)
Chain Length:65
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L25
Chain IDs:LB (auth: LZ)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26-A
Chain IDs:MB (auth: La)
Chain Length:125
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27-A
Chain IDs:NB (auth: Lb)
Chain Length:135
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:OB (auth: Lc)
Chain Length:148
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:PB (auth: Ld)
Chain Length:58
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L30
Chain IDs:QB (auth: Le)
Chain Length:96
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31-A
Chain IDs:RB (auth: Lf)
Chain Length:361
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:SB (auth: Lg)
Chain Length:294
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L33-A
Chain IDs:TB (auth: Lh)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34-A
Chain IDs:UB (auth: Li)
Chain Length:112
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35-A
Chain IDs:VB (auth: Lj)
Chain Length:233
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36-A
Chain IDs:WB (auth: Lk)
Chain Length:99
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37-A
Chain IDs:XB (auth: Ll)
Chain Length:218
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L38
Chain IDs:YB (auth: Lm)
Chain Length:169
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:ZB (auth: Ln)
Chain Length:193
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L40-A
Chain IDs:AC (auth: Lo)
Chain Length:52
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L41-A
Chain IDs:BC (auth: Lp)
Chain Length:203
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L42-A
Chain IDs:CC (auth: Lq)
Chain Length:103
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L43-A
Chain IDs:DC (auth: Lr)
Chain Length:183
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3
Chain IDs:M (auth: SA)
Chain Length:87
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S5
Chain IDs:O (auth: SB)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10-A
Chain IDs:T (auth: SC)
Chain Length:144
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:V (auth: SD)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15
Chain IDs:K (auth: SE)
Chain Length:97
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S16-A
Chain IDs:Y (auth: SF)
Chain Length:141
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17-B
Chain IDs:Z (auth: SG)
Chain Length:57
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18-A
Chain IDs:AA (auth: SH)
Chain Length:145
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19-A
Chain IDs:BA (auth: SI)
Chain Length:143
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20
Chain IDs:CA (auth: SJ)
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28-A
Chain IDs:NA (auth: SL)
Chain Length:63
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29-A
Chain IDs:JA (auth: SM)
Chain Length:53
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S31
Chain IDs:LA (auth: SN)
Chain Length:73
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein ASC1
Chain IDs:MA (auth: SO)
Chain Length:312
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S0-A
Chain IDs:I (auth: SP)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S1-A
Chain IDs:J (auth: SQ)
Chain Length:232
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2
Chain IDs:L (auth: SR)
Chain Length:216
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4-A
Chain IDs:N (auth: SS)
Chain Length:258
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6-A
Chain IDs:P (auth: ST)
Chain Length:228
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7-A
Chain IDs:Q (auth: SU)
Chain Length:184
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8-A
Chain IDs:R (auth: SV)
Chain Length:198
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9-A
Chain IDs:S (auth: SW)
Chain Length:184
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11-A
Chain IDs:U (auth: SX)
Chain Length:142
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:W (auth: SY)
Chain Length:150
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14-B
Chain IDs:X (auth: SZ)
Chain Length:127
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21-A
Chain IDs:DA (auth: Sa)
Chain Length:87
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S22-A
Chain IDs:EA (auth: Sb)
Chain Length:206
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S23-A
Chain IDs:FA (auth: Sc)
Chain Length:144
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24-A
Chain IDs:GA (auth: Sd)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26-B
Chain IDs:HA (auth: Se)
Chain Length:97
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27-A
Chain IDs:IA (auth: Sf)
Chain Length:141
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30-A
Chain IDs:KA (auth: Sg)
Chain Length:57
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:A site tRNA
Chain IDs:E (auth: m)
Chain Length:76
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polyribonucleotide
Description:P site initiator tRNA
Chain IDs:F (auth: n)
Chain Length:75
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Chain IDs:G (auth: z)
Chain Length:588
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
The assembly factor Reh1 is released from the ribosome during its initial round of translation.
Nat Commun 16 1278 1278 (2025)
PMID: 39900920 DOI: 10.1038/s41467-025-55844-8

Abstact

Assembly of functional ribosomal subunits and successfully delivering them to the translating pool is a prerequisite for protein synthesis and cell growth. In S. cerevisiae, the ribosome assembly factor Reh1 binds to pre-60S subunits at a late stage during their cytoplasmic maturation. Previous work shows that the C-terminus of Reh1 inserts into the polypeptide exit tunnel of the pre-60S subunit. Here, we show that Reh1-bound nascent 60S subunits associate with 40S subunits to form actively translating ribosomes. Using selective ribosome profiling, we found that Reh1-bound ribosomes populate open reading frames near start codons. Reh1-bound ribosomes are also strongly enriched for initiator tRNA, indicating they are associated with early elongation. Using cryo-electron microscopy to image Reh1-bound 80S ribosomes, we found they contain A site peptidyl tRNA, P site tRNA and eIF5A, indicating that Reh1 does not dissociate from 60S until translation elongation. We propose that Reh1 is displaced by the elongating peptide chain, making it the last assembly factor released from the nascent 60S subunit during its initial round of translation.

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Primary Citation of related structures