8UTA image
Deposition Date 2023-10-30
Release Date 2024-04-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8UTA
Keywords:
RNA
Title:
yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Ruminococcus gauvreauii (Taxon ID: 438033)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.05 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
8UTA validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab BL3-6 S97N heavy chain
Chain IDs:C (auth: A), D (auth: H)
Chain Length:233
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab BL3-6 S97N light chain
Chain IDs:E (auth: B), F (auth: L)
Chain Length:215
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polyribonucleotide
Molecule:yjdF RNA (R. gauvreauii)
Chain IDs:A (auth: N), B (auth: R)
Chain Length:128
Number of Molecules:2
Biological Source:Ruminococcus gauvreauii
Ligand Molecules
MG
PRL
Primary Citation
Structural basis for promiscuity in ligand recognition by yjdF riboswitch.
Cell Discov 10 37 37 (2024)
PMID: 38565535 DOI: 10.1038/s41421-024-00663-2
Primary Citation of related structures
8UIW