ISDA

Entry Detail

PDB ID:

8UTA

Keywords:

RNA

Title:

yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N

Biological Source:

Source Organism:

Mus musculus, Ruminococcus gauvreauii

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2023-10-30

Release Date:

2024-04-10

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.05 Å

R-Value Free:

0.26

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 1

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Macromolecular Entities

Polymer Type:polypeptide(L)
Description:Fab BL3-6 S97N heavy chain
Chain IDs:C (auth: A), D (auth: H)
Chain Length:233
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Description:Fab BL3-6 S97N light chain
Chain IDs:E (auth: B), F (auth: L)
Chain Length:215
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polyribonucleotide
Description:yjdF RNA (R. gauvreauii)
Chain IDs:A (auth: N), B (auth: R)
Chain Length:128
Number of Molecules:2
Biological Source:Ruminococcus gauvreauii

Ligand Molecules

PRL

Primary Citation

Structural basis for promiscuity in ligand recognition by yjdF riboswitch.

Krochmal, D, Roman, C, Lewicka, A, Shao, Y, Piccirilli, J.A.Show

Cell Discov 10 37 37 (2024)

PMID: 38565535 DOI: 10.1038/s41421-024-00663-2

Primary Citation of related structures