8UMI image
Deposition Date 2023-10-17
Release Date 2024-10-30
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8UMI
Keywords:
TRANSCRIPTION
Title:
consensus map of PICdeltaTFIIK form1
Biological Source:
Source Organism:
Saccharomyces cerevisiae (Taxon ID: 4932)
Host Organism:
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8UMI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPD
Chain IDs:A (auth: 0)
Chain Length:778
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P06839 Pfam ID:PF06733, PF06777, PF13307
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TFB1 isoform 1
Chain IDs:B (auth: 1)
Chain Length:642
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32776 Pfam ID:PF08567, PF03909
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II transcription factor B subunit 2
Chain IDs:C (auth: 2)
Chain Length:513
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q02939 Pfam ID:PF03849, PF18307
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH subunit TFB4
Chain IDs:D (auth: 4)
Chain Length:338
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q12004 Pfam ID:PF03850
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH subunit TFB5
Gene (Uniprot):TFB5
Chain IDs:BA (auth: 5)
Chain Length:72
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q3E7C1 Pfam ID:PF06331
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH
Chain IDs:E (auth: 6)
Chain Length:461
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q04673 Pfam ID:PF04056, PF07975
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPB
Gene (Uniprot):SSL2
Chain IDs:F (auth: 7)
Chain Length:843
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:Q00578 Pfam ID:PF13625, PF04851, PF16203
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit
Chain IDs:H (auth: A)
Chain Length:1733
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P04050 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:I (auth: B)
Chain Length:1224
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P08518 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:J (auth: C)
Chain Length:318
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P16370 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB4
Chain IDs:K (auth: D)
Chain Length:221
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P20433 Pfam ID:PF03874
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC1
Chain IDs:L (auth: E)
Chain Length:215
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P20434 Pfam ID:PF03871, PF01191
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene (Uniprot):RPO26
Chain IDs:M (auth: F)
Chain Length:155
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P20435 Pfam ID:PF01192
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB7
Chain IDs:N (auth: G)
Chain Length:171
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P34087 Pfam ID:PF03876, PF00575
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:O (auth: H)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P20436 Pfam ID:PF03870
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Chain IDs:P (auth: I)
Chain Length:122
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P27999 Pfam ID:PF02150, PF01096
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases II subunit RPABC5
Chain IDs:Q (auth: J)
Chain Length:70
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P22139 Pfam ID:PF01194
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB11
Chain IDs:R (auth: K)
Chain Length:120
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P38902 Pfam ID:PF13656
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases II subunit RPABC4
Chain IDs:S (auth: L)
Chain Length:70
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P40422 Pfam ID:PF03604
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIB
Gene (Uniprot):SUA7
Chain IDs:G (auth: M)
Chain Length:345
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P29055 Pfam ID:PF08271, PF00382
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (64-MER)
Chain IDs:CA (auth: N)
Chain Length:64
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TATA-box-binding protein
Gene (Uniprot):SPT15
Chain IDs:W (auth: O)
Chain Length:240
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P13393 Pfam ID:PF00352
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIF subunit beta
Chain IDs:U (auth: P)
Chain Length:400
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P41896 Pfam ID:PF17683, PF02270
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIF subunit alpha
Gene (Uniprot):TFG1
Chain IDs:T (auth: Q)
Chain Length:735
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P41895 Pfam ID:PF05793
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor
Chain IDs:V (auth: S)
Chain Length:309
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P07273 Pfam ID:PF08711, PF07500, PF01096
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (64-MER)
Chain IDs:DA (auth: T)
Chain Length:64
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIA large subunit
Chain IDs:X (auth: U)
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32773 Pfam ID:PF03153
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIA subunit 2
Chain IDs:Y (auth: V)
Chain Length:122
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P32774 Pfam ID:PF02268, PF02751
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIE subunit alpha
Chain IDs:Z (auth: W)
Chain Length:482
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P36100 Pfam ID:PF02002
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription initiation factor IIE subunit beta
Chain IDs:AA (auth: X)
Chain Length:328
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
UniProt ID:P36145 Pfam ID:PF02186, PF18121, PF22254
Ligand Molecules
MG
SF4
ZN
Primary Citation
consensus map of PICdeltaTFIIK form1
To be published ? ? ? (?)
Primary Citation of related structures
8UMI