8ULD image
Deposition Date 2023-10-16
Release Date 2024-02-14
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8ULD
Keywords:
Title:
SARA CoV-2 3C-like protease in complex with GSK3487016A
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Replicase polyprotein 1a
Chain IDs:A
Chain Length:325
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus
Primary Citation
Exploration of the P1 residue in 3CL protease inhibitors leading to the discovery of a 2-tetrahydrofuran P1 replacement.
Bioorg.Med.Chem. 100 117618 117618 (2024)
PMID: 38309201 DOI: 10.1016/j.bmc.2024.117618

Abstact

The virally encoded 3C-like protease (3CLpro) is a well-validated drug target for the inhibition of coronaviruses including Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2). Most inhibitors of 3CLpro are peptidomimetic, with a γ-lactam in place of Gln at the P1 position of the pseudopeptide chain. An effort was pursued to identify a viable alternative to the γ-lactam P1 mimetic which would improve physicochemical properties while retaining affinity for the target. Discovery of a 2-tetrahydrofuran as a suitable P1 replacement that is a potent enzymatic inhibitor of 3CLpro in SARS-CoV-2 virus is described herein.

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Primary Citation of related structures