8UJJ image
Entry Detail
PDB ID:
8UJJ
EMDB ID:
EMD-42320
Keywords:
RIBOSOME
Title:
In situ HHT and CHX treated A-P state 80S ribosome
Biological Source:
Source Organism:
Homo sapiens
PDB Version:
Deposition Date:
2023-10-11
Release Date:
2025-04-16
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.56 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
8UJJ validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:A site tRNA
Chain IDs:A (auth: At)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:28S rRNA
Chain IDs:B (auth: L5)
Chain Length:5070
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:5S rRNA [Homo sapiens]
Chain IDs:C (auth: L7)
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:5.8S rRNA [Homo sapiens]
Chain IDs:D (auth: L8)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:E (auth: LA)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62917 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL3
Chain IDs:F (auth: LB)
Chain Length:402
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P39023 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4
Chain IDs:G (auth: LC)
Chain Length:368
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P36578 Pfam ID:PF00573, PF14374
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL18
Chain IDs:H (auth: LD)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46777 Pfam ID:PF17144, PF14204
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL6
Chain IDs:I (auth: LE)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q02878 Pfam ID:PF03868, PF01159
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7
Chain IDs:J (auth: LF)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18124 Pfam ID:PF08079, PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7a
Chain IDs:K (auth: LG)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62424 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9
Chain IDs:L (auth: LH)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P32969 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein uL16-like
Chain IDs:M (auth: LI)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96L21 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11
Chain IDs:N (auth: LJ)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62913 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL13
Chain IDs:O (auth: LL)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P26373 Pfam ID:PF01294
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14
Chain IDs:P (auth: LM)
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P50914 Pfam ID:PF01929
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L15
Chain IDs:Q (auth: LN)
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61313 Pfam ID:PF00827
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13a
Chain IDs:R (auth: LO)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P40429 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17
Chain IDs:S (auth: LP)
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18621 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18
Chain IDs:T (auth: LQ)
Chain Length:187
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q07020 Pfam ID:PF17135
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19
Chain IDs:U (auth: LR)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P84098 Pfam ID:PF01280
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18a
Chain IDs:V (auth: LS)
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q02543 Pfam ID:PF01775
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21
Chain IDs:W (auth: LT)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46778 Pfam ID:PF01157
Protein Blast
Polymer Type:polypeptide(L)
Description:Heparin-binding protein HBp15
Chain IDs:X (auth: LU)
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q7Z4W8 Pfam ID:PF01776
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23
Chain IDs:Y (auth: LV)
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62829 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:Z (auth: LW)
Chain Length:124
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A994J4A5 Pfam ID:PF01246
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23a
Chain IDs:AA (auth: LX)
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62750 Pfam ID:PF03939, PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26
Chain IDs:BA (auth: LY)
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61254 Pfam ID:PF16906, PF00467
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:CA (auth: LZ)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61353 Pfam ID:PF00467, PF01777
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27a
Chain IDs:DA (auth: La)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46776 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL29
Chain IDs:EA (auth: Lb)
Chain Length:402
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P47914 Pfam ID:PF01779
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L30
Chain IDs:FA (auth: Lc)
Chain Length:368
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62888 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31
Chain IDs:GA (auth: Ld)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62899 Pfam ID:PF01198
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:HA (auth: Le)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62910 Pfam ID:PF01655
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35a
Chain IDs:IA (auth: Lf)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18077 Pfam ID:PF01247
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34
Chain IDs:JA (auth: Lg)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P49207 Pfam ID:PF01199
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35
Chain IDs:KA (auth: Lh)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P42766 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:LA (auth: Li)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9Y3U8 Pfam ID:PF01158
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37
Chain IDs:MA (auth: Lj)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61927 Pfam ID:PF01907
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L38
Chain IDs:NA (auth: Lk)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63173 Pfam ID:PF01781
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:OA (auth: Ll)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62891 Pfam ID:PF00832
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL40
Chain IDs:PA (auth: Lm)
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62987 Pfam ID:PF01020
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L41
Chain IDs:QA (auth: Ln)
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62945 Pfam ID:PF05162
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36a
Chain IDs:RA (auth: Lo)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P83881 Pfam ID:PF00935
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37a
Chain IDs:SA (auth: Lp)
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61513 Pfam ID:PF01780
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:TA (auth: Lr)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46779 Pfam ID:PF01778
Protein Blast
Polymer Type:polypeptide(L)
Description:60S acidic ribosomal protein P0
Chain IDs:UA (auth: Ls)
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P05388 Pfam ID:PF00466, PF17777
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL11
Chain IDs:VA (auth: Lt)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P30050 Pfam ID:PF03946, PF00298
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L10a
Chain IDs:WA (auth: Lz)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62906 Pfam ID:PF00687
Polymer Type:polyribonucleotide
Description:P site tRNA
Chain IDs:XA (auth: Pt)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:18S rRNA
Chain IDs:YA (auth: S2)
Chain Length:1740
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein SA
Chain IDs:ZA (auth: SA)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P08865 Pfam ID:PF00318
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3a
Chain IDs:AB (auth: SB)
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61247 Pfam ID:PF01015
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2
Chain IDs:BB (auth: SC)
Chain Length:64
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P15880 Pfam ID:PF00333, PF03719
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS3
Chain IDs:CB (auth: SD)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P23396 Pfam ID:PF07650, PF00189
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS4, X isoform
Chain IDs:DB (auth: SE)
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62701 Pfam ID:PF08071, PF00900, PF00467, PF16121
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S5
Chain IDs:EB (auth: SF)
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46782 Pfam ID:PF00177
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:FB (auth: SG)
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62753 Pfam ID:PF01092
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS7
Chain IDs:GB (auth: SH)
Chain Length:189
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62081 Pfam ID:PF01251
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:HB (auth: SI)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62241 Pfam ID:PF01201
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9
Chain IDs:IB (auth: SJ)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46781 Pfam ID:PF00163, PF01479
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10
Chain IDs:JB (auth: SK)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46783 Pfam ID:PF03501
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11
Chain IDs:KB (auth: SL)
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62280 Pfam ID:PF16205, PF00366
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS12
Chain IDs:LB (auth: SM)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P25398 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:MB (auth: SN)
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62277 Pfam ID:PF08069, PF00312
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS11
Chain IDs:NB (auth: SO)
Chain Length:140
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62263 Pfam ID:PF00411
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS19
Chain IDs:OB (auth: SP)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62841 Pfam ID:PF00203
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein uS9
Chain IDs:PB (auth: SQ)
Chain Length:144
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62249 Pfam ID:PF00380
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17
Chain IDs:QB (auth: SR)
Chain Length:135
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P08708 Pfam ID:PF00833
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18
Chain IDs:RB (auth: SS)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62269 Pfam ID:PF00416
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19
Chain IDs:SB (auth: ST)
Chain Length:143
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P39019 Pfam ID:PF01090
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20
Chain IDs:TB (auth: SU)
Chain Length:104
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60866 Pfam ID:PF00338
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21
Chain IDs:UB (auth: SV)
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63220 Pfam ID:PF01249
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15a
Chain IDs:VB (auth: SW)
Chain Length:129
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62244 Pfam ID:PF00410
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S23
Chain IDs:WB (auth: SX)
Chain Length:141
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62266 Pfam ID:PF00164
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:XB (auth: SY)
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62847 Pfam ID:PF01282
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS25
Chain IDs:YB (auth: SZ)
Chain Length:75
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62851 Pfam ID:PF03297
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:ZB (auth: Sa)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62854 Pfam ID:PF01283
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS27
Chain IDs:AC (auth: Sb)
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P42677 Pfam ID:PF01667
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28
Chain IDs:BC (auth: Sc)
Chain Length:64
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62857 Pfam ID:PF01200
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29
Chain IDs:CC (auth: Sd)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62273 Pfam ID:PF00253
Protein Blast
Polymer Type:polypeptide(L)
Description:Small ribosomal subunit protein eS30
Chain IDs:DC (auth: Se)
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62861 Pfam ID:PF04758
Protein Blast
Polymer Type:polypeptide(L)
Description:Ubiquitin-40S ribosomal protein S27a
Chain IDs:EC (auth: Sf)
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62979 Pfam ID:PF01599
Protein Blast
Polymer Type:polypeptide(L)
Description:Receptor of activated protein C kinase 1
Chain IDs:FC (auth: Sg)
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63244 Pfam ID:PF00400
Ligand Molecules
3HE
HMT
MG
ZN
Primary Citation
In situ HHT and CHX treated human A-P state 80S ribosome
To Be Published ? ? ? (?)
Primary Citation of related structures
8UJJ