8UJD image
Entry Detail
PDB ID:
8UJD
EMDB ID:
EMD-42319
Keywords:
RIBOSOME
Title:
In situ human 60S ribosome with eIF6
Biological Source:
Source Organism:
Homo sapiens
PDB Version:
Deposition Date:
2023-10-11
Release Date:
2025-04-16
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.96 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
8UJD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Proliferation-associated protein 2G4
Chain IDs:TA (auth: CA)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9UQ80 Pfam ID:PF00557
Polymer Type:polyribonucleotide
Description:28S rRNA
Chain IDs:B (auth: L5)
Chain Length:5070
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:5S rRNA [Homo sapiens]
Chain IDs:C (auth: L7)
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:5.8S rRNA [Homo sapiens]
Chain IDs:D (auth: L8)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:E (auth: LA)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62917 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL3
Chain IDs:F (auth: LB)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P39023 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4
Chain IDs:G (auth: LC)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P36578 Pfam ID:PF00573, PF14374
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein uL18
Chain IDs:H (auth: LD)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46777 Pfam ID:PF17144, PF14204
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:I (auth: LE)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A2K6U013 Pfam ID:PF03868, PF01159
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7
Chain IDs:J (auth: LF)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18124 Pfam ID:PF08079, PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7a
Chain IDs:K (auth: LG)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62424 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9
Chain IDs:L (auth: LH)
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P32969 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein uL16-like
Chain IDs:M (auth: LI)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96L21 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11
Chain IDs:N (auth: LJ)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62913 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL13
Chain IDs:O (auth: LL)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P26373 Pfam ID:PF01294
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14
Chain IDs:P (auth: LM)
Chain Length:139
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P50914 Pfam ID:PF01929
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L15
Chain IDs:Q (auth: LN)
Chain Length:203
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61313 Pfam ID:PF00827
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13a
Chain IDs:R (auth: LO)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P40429 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17
Chain IDs:S (auth: LP)
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18621 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18
Chain IDs:T (auth: LQ)
Chain Length:187
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q07020 Pfam ID:PF17135
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19
Chain IDs:U (auth: LR)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P84098 Pfam ID:PF01280
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18a
Chain IDs:V (auth: LS)
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q02543 Pfam ID:PF01775
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21
Chain IDs:W (auth: LT)
Chain Length:159
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46778 Pfam ID:PF01157
Protein Blast
Polymer Type:polypeptide(L)
Description:Heparin-binding protein HBp15
Chain IDs:X (auth: LU)
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q7Z4W8 Pfam ID:PF01776
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23
Chain IDs:Y (auth: LV)
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62829 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:A (auth: LW)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A994J4A5 Pfam ID:PF01246
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23a
Chain IDs:Z (auth: LX)
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62750 Pfam ID:PF03939, PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26
Chain IDs:AA (auth: LY)
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61254 Pfam ID:PF16906, PF00467
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:BA (auth: LZ)
Chain Length:135
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61353 Pfam ID:PF00467, PF01777
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27a
Chain IDs:CA (auth: La)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46776 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL29
Chain IDs:DA (auth: Lb)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P47914 Pfam ID:PF01779
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L30
Chain IDs:EA (auth: Lc)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62888 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31
Chain IDs:FA (auth: Ld)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62899 Pfam ID:PF01198
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:GA (auth: Le)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62910 Pfam ID:PF01655
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35a
Chain IDs:HA (auth: Lf)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18077 Pfam ID:PF01247
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34
Chain IDs:IA (auth: Lg)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P49207 Pfam ID:PF01199
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35
Chain IDs:JA (auth: Lh)
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P42766 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:KA (auth: Li)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9Y3U8 Pfam ID:PF01158
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37
Chain IDs:LA (auth: Lj)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61927 Pfam ID:PF01907
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L38
Chain IDs:MA (auth: Lk)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63173 Pfam ID:PF01781
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:NA (auth: Ll)
Chain Length:50
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62891 Pfam ID:PF00832
Protein Blast
Polymer Type:polypeptide(L)
Description:Large ribosomal subunit protein eL40
Chain IDs:OA (auth: Lm)
Chain Length:139
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62987 Pfam ID:PF01020
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36a
Chain IDs:PA (auth: Lo)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P83881 Pfam ID:PF00935
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37a
Chain IDs:QA (auth: Lp)
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61513 Pfam ID:PF01780
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:RA (auth: Lr)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46779 Pfam ID:PF01778
Protein Blast
Polymer Type:polypeptide(L)
Description:Eukaryotic translation initiation factor 6
Chain IDs:SA (auth: P)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P56537 Pfam ID:PF01912
Ligand Molecules
MG
ZN
Primary Citation
In situ human 60S ribosome with eIF6
To Be Published ? ? ? (?)
Primary Citation of related structures
8UJD