8UIX image
Deposition Date 2023-10-10
Release Date 2024-10-23
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8UIX
Keywords:
Title:
FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, boronic acid-based compound Y43 bound
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fluorophosphonate-binding serine hydrolase E
Chain IDs:A, B
Chain Length:279
Number of Molecules:2
Biological Source:Staphylococcus aureus subsp. aureus USA300
Ligand Molecules
Primary Citation
Identification of covalent inhibitors of Staphylococcus aureus serine hydrolases important for virulence and biofilm formation.
Nat Commun 16 5046 5046 (2025)
PMID: 40447595 DOI: 10.1038/s41467-025-60367-3

Abstact

Staphylococcus aureus is a leading cause of bacteria-associated mortality worldwide. New tools are needed to both image and treat this pathogen. We previously identified a group of S. aureus serine hydrolases (Fphs), which regulate aspects of virulence and lipid metabolism. However, due to high structural and functional similarities, it remains challenging to distinguish the specific roles of members of this family. Here, we apply a high-throughput screening approach using a library of covalent electrophiles to identify inhibitors for FphB, FphE, and FphH. We identify selective covalent inhibitors for each target without the need for extensive medicinal chemistry optimization. Structural and biochemical analysis identify novel binding modes for several of the inhibitors. Functional studies using the inhibitors suggest that all three hydrolases likely play distinct functional roles in biofilm formation and virulence. This approach has the potential to be applied to target hydrolases in other diverse pathogens or higher eukaryotes.

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Primary Citation of related structures