8UIV image
Entry Detail
PDB ID:
8UIV
Keywords:
Title:
H47Q NicC with bound FAD
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-10-10
Release Date:
2024-02-21
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:6-hydroxynicotinate 3-monooxygenase
Mutations:H47Q
Chain IDs:A
Chain Length:405
Number of Molecules:1
Biological Source:Pseudomonas putida KT2440
Ligand Molecules
Primary Citation
Ligand bound structure of a 6-hydroxynicotinic acid 3-monooxygenase provides mechanistic insights.
Arch.Biochem.Biophys. 752 109859 109859 (2024)
PMID: 38104959 DOI: 10.1016/j.abb.2023.109859

Abstact

6-Hydroxynicotinic acid 3-monooxygenase (NicC) is a bacterial enzyme involved in the degradation of nicotinic acid. This enzyme is a Class A flavin-dependent monooxygenase that catalyzes a unique decarboxylative hydroxylation. The unliganded structure of this enzyme has previously been reported and studied using steady- and transient-state kinetics to support a comprehensive kinetic mechanism. Here we report the crystal structure of the H47Q NicC variant in both a ligand-bound (solved to 2.17 Å resolution) and unliganded (1.51 Å resolution) form. Interestingly, in the liganded form, H47Q NicC is bound to 2-mercaptopyridine (2-MP), a contaminant present in the commercial stock of 6-mercaptopyridine-3-carboxylic acid(6-MNA), a substrate analogue. 2-MP binds weakly to H47Q NicC and is not a substrate for the enzyme. Based on kinetic and thermodynamic characterization, we have fortuitously captured a catalytically inactive H47Q NicC•2-MP complex in our crystal structure. This complex reveals interesting mechanistic details about the reaction catalyzed by 6-hydroxynicotinic acid 3-monooxygenase.

Legend

Protein

Chemical

Disease

Primary Citation of related structures