8UEJ image
Deposition Date 2023-10-01
Release Date 2024-05-15
Last Version Date 2024-05-22
Entry Detail
PDB ID:
8UEJ
Keywords:
VIRUS
Title:
ssRNA phage PhiCb5 virion
Biological Source:
Source Organism:
Caulobacter phage phiCb5 (Taxon ID: 767473)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8UEJ validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein
Chain IDs:A (auth: AA), B (auth: AB), C (auth: AC), D (auth: AG), E (auth: AH), F (auth: AI), G (auth: AM), H (auth: AN), I (auth: AO), J (auth: AS), K (auth: AT), L (auth: AU), M (auth: AY), N (auth: AZ), O (auth: BA), P (auth: BE), Q (auth: BF), R (auth: BG), S (auth: BK), T (auth: BL), U (auth: BM), V (auth: BQ), W (auth: BR), X (auth: BS), Y (auth: BW), Z (auth: BX), AA (auth: BY), BA (auth: CC), CA (auth: CD), DA (auth: CE), EA (auth: CI), FA (auth: CJ), GA (auth: CK), HA (auth: CO), IA (auth: CP), JA (auth: CQ), KA (auth: CU), LA (auth: CV), MA (auth: CW), NA (auth: DA), OA (auth: DB), PA (auth: DC), QA (auth: DG), RA (auth: DH), SA (auth: DI), TA (auth: DM), UA (auth: DN), VA (auth: DO), WA (auth: DS), XA (auth: DT), YA (auth: DU), ZA (auth: DY), AB (auth: DZ), BB (auth: EA), CB (auth: EE), DB (auth: EF), EB (auth: EG), FB (auth: EK), GB (auth: EL), HB (auth: EM), IB (auth: EQ), JB (auth: ER), KB (auth: ES), LB (auth: EW), MB (auth: EX), NB (auth: EY), OB (auth: FC), PB (auth: FD), QB (auth: FE), RB (auth: FI), SB (auth: FJ), TB (auth: FK), UB (auth: FO), VB (auth: FP), WB (auth: FQ), XB (auth: FU), YB (auth: FV), ZB (auth: FW), AC (auth: GA), BC (auth: GB), CC (auth: GC), DC (auth: GG), EC (auth: GH), FC (auth: GI), GC (auth: GM), HC (auth: GN), IC (auth: GO), JC (auth: GS), KC (auth: GT), LC (auth: GU), MC (auth: GY), NC (auth: GZ), OC (auth: HC), PC (auth: HD), QC (auth: HE), RC (auth: HI), SC (auth: HJ), TC (auth: HK), UC (auth: HO), VC (auth: HP), WC (auth: HQ), XC (auth: HU), YC (auth: HV), ZC (auth: HW), AD (auth: IA), BD (auth: IB), CD (auth: IC), DD (auth: IG), ED (auth: IH), FD (auth: II), GD (auth: IM), HD (auth: IN), ID (auth: IO), JD (auth: IS), KD (auth: IT), LD (auth: IU), MD (auth: IY), ND (auth: IZ), OD (auth: JA), PD (auth: JE), QD (auth: JF), RD (auth: JG), SD (auth: JK), TD (auth: JL), UD (auth: JM), VD (auth: JQ), WD (auth: JR), XD (auth: JS), YD (auth: JW), ZD (auth: JX), AE (auth: JY), BE (auth: KC), CE (auth: KD), DE (auth: KE), EE (auth: KI), FE (auth: KJ), GE (auth: KK), HE (auth: KO), IE (auth: KP), JE (auth: KQ), KE (auth: KU), LE (auth: KV), ME (auth: KW), NE (auth: LA), OE (auth: LB), PE (auth: LC), QE (auth: LG), RE (auth: LH), SE (auth: LI), TE (auth: LM), UE (auth: LN), VE (auth: LO), WE (auth: LS), XE (auth: LT), YE (auth: LU), ZE (auth: LY), AF (auth: LZ), BF (auth: MA), CF (auth: ME), DF (auth: MF), EF (auth: MG), FF (auth: MK), GF (auth: ML), HF (auth: MM), IF (auth: MQ), JF (auth: MR), KF (auth: MS), LF (auth: MW), MF (auth: MX), NF (auth: NA), OF (auth: NB), PF (auth: NC), QF (auth: NG), RF (auth: NH), SF (auth: NI), TF (auth: NM), UF (auth: NN), VF (auth: NO)
Chain Length:122
Number of Molecules:178
Biological Source:Caulobacter phage phiCb5
UniProt ID:D7RIC2 Pfam ID:PF22387
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Maturation protein
Chain IDs:WF (auth: M)
Chain Length:372
Number of Molecules:1
Biological Source:Caulobacter phage phiCb5
UniProt ID:D7RIC1 Pfam ID:PF03863
Ligand Molecules
CA
Primary Citation
Structural mechanisms of Tad pilus assembly and its interaction with an RNA virus.
Sci Adv 10 eadl4450 eadl4450 (2024)
PMID: 38701202 DOI: 10.1126/sciadv.adl4450

Abstact

Caulobacter crescentus Tad (tight adherence) pili, part of the type IV pili family, are crucial for mechanosensing, surface adherence, bacteriophage (phage) adsorption, and cell-cycle regulation. Unlike other type IV pilins, Tad pilins lack the typical globular β sheet domain responsible for pilus assembly and phage binding. The mechanisms of Tad pilus assembly and its interaction with phage ΦCb5 have been elusive. Using cryo-electron microscopy, we unveiled the Tad pilus assembly mechanism, featuring a unique network of hydrogen bonds at its core. We then identified the Tad pilus binding to the ΦCb5 maturation protein (Mat) through its β region. Notably, the amino terminus of ΦCb5 Mat is exposed outside the capsid and phage/pilus interface, enabling the attachment of fluorescent and affinity tags. These engineered ΦCb5 virions can be efficiently assembled and purified in Escherichia coli, maintaining infectivity against C. crescentus, which presents promising applications, including RNA delivery and phage display.

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Chemical

Disease

Primary Citation of related structures
8UEJ