8UD4 image
Deposition Date 2023-09-28
Release Date 2024-04-24
Last Version Date 2025-05-21
Entry Detail
PDB ID:
8UD4
Keywords:
VIRAL PROTEIN/RNA
Title:
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.25 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8UD4 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-structural protein 15
Gene (Uniprot):rep
Mutations:H234A
Chain IDs:A (auth: F), B (auth: D), C (auth: E), D (auth: B), E (auth: A), F (auth: C)
Chain Length:359
Number of Molecules:6
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTD1 Pfam ID:PF19219, PF19216, PF19215 EC:2.7.7.48
Polymer Type:polyribonucleotide
Molecule:RNA (35-MER)
Chain IDs:G
Chain Length:35
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polyribonucleotide
Molecule:RNA (35-MER)
Chain IDs:H
Chain Length:35
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
NA
Primary Citation
Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell 15 547 552 (2024)
PMID: 38613382 DOI: 10.1093/procel/pwae009
Primary Citation of related structures
8UD4