8UCA image
Deposition Date 2023-09-26
Release Date 2025-01-15
Last Version Date 2025-02-19
Entry Detail
PDB ID:
8UCA
Title:
Formation of I2+III2 supercomplex rescues respiratory chain defects
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 1
Gene (Uniprot):mt-Nd1
Chain IDs:D (auth: 1), RA (auth: 1a)
Chain Length:318
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 2
Gene (Uniprot):mt-Nd2
Chain IDs:I (auth: 2), WA (auth: 2a)
Chain Length:345
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 3
Gene (Uniprot):mt-Nd3
Chain IDs:A (auth: 3), OA (auth: 3a)
Chain Length:115
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 1, mitochondrial
Gene (Uniprot):Uqcrc1
Chain IDs:CC (auth: 3A), MC (auth: 3L)
Chain Length:115
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 2, mitochondrial
Gene (Uniprot):Uqcrc2
Chain IDs:DC (auth: 3B), NC (auth: 3M)
Chain Length:439
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Gene (Uniprot):Mt-Cyb
Chain IDs:EC (auth: 3C), OC (auth: 3N)
Chain Length:380
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c1, heme protein, mitochondrial
Gene (Uniprot):Cyc1
Chain IDs:FC (auth: 3D), PC (auth: 3O)
Chain Length:241
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9
Gene (Uniprot):Uqcrfs1
Chain IDs:GC (auth: 3E), QC (auth: 3P)
Chain Length:196
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 7
Gene (Uniprot):Uqcrb
Chain IDs:HC (auth: 3F), RC (auth: 3Q)
Chain Length:110
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8
Gene (Uniprot):Uqcrq
Chain IDs:IC (auth: 3G), SC (auth: 3R)
Chain Length:81
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Gene (Uniprot):Uqcrh
Chain IDs:JC (auth: 3H), TC (auth: 3S)
Chain Length:76
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9
Gene (Uniprot):Uqcr10
Chain IDs:KC (auth: 3J), VC (auth: 3U)
Chain Length:63
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 10
Gene (Uniprot):Uqcr11
Chain IDs:LC (auth: 3K), WC (auth: 3V)
Chain Length:56
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Gene (Uniprot):Uqcrfs1
Chain IDs:UC (auth: 3T)
Chain Length:78
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4
Gene (Uniprot):Mtnd4
Chain IDs:H (auth: 4), VA (auth: 4a)
Chain Length:459
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4L
Gene (Uniprot):Mtnd4l
Chain IDs:F (auth: 4L), TA (auth: 4l)
Chain Length:98
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 5
Gene (Uniprot):Mtnd5
Chain IDs:G (auth: 5), UA (auth: 5a)
Chain Length:607
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 6
Gene (Uniprot):Mtnd6
Chain IDs:E (auth: 6), SA (auth: 6a)
Chain Length:172
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Gene (Uniprot):Ndufa1
Chain IDs:V (auth: A1), JB (auth: a1)
Chain Length:70
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Gene (Uniprot):Ndufa2
Chain IDs:N (auth: A2), BB (auth: a2)
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Gene (Uniprot):Ndufa3
Chain IDs:W (auth: A3), KB (auth: a3)
Chain Length:84
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Gene (Uniprot):Ndufa5
Chain IDs:Q (auth: A5), EB (auth: a5)
Chain Length:116
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Gene (Uniprot):Ndufa6
Chain IDs:R (auth: A6), FB (auth: a6)
Chain Length:131
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
Gene (Uniprot):Ndufa7
Chain IDs:MA (auth: A7), AC (auth: a7)
Chain Length:112
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Gene (Uniprot):Ndufa8
Chain IDs:S (auth: A8), GB (auth: a8)
Chain Length:172
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Gene (Uniprot):Ndufa9
Chain IDs:K (auth: A9), YA (auth: a9)
Chain Length:377
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein, mitochondrial
Gene (Uniprot):Ndufab1
Chain IDs:O (auth: AB), P (auth: AC), CB (auth: ab), DB (auth: ac)
Chain Length:156
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Gene (Uniprot):Ndufa10
Chain IDs:J (auth: AL), XA (auth: al)
Chain Length:355
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Gene (Uniprot):Ndufa11
Chain IDs:T (auth: AM), HB (auth: am)
Chain Length:142
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Gene (Uniprot):Ndufa12
Chain IDs:LA (auth: AN), ZB (auth: an)
Chain Length:145
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Gene (Uniprot):Ndufa13
Chain IDs:U (auth: AO), IB (auth: ao)
Chain Length:144
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Gene (Uniprot):Ndufb1
Chain IDs:AA (auth: B1), OB (auth: b1)
Chain Length:57
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
Gene (Uniprot):Ndufb2
Chain IDs:EA (auth: B2), SB (auth: b2)
Chain Length:105
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Gene (Uniprot):Ndufb3
Chain IDs:FA (auth: B3), TB (auth: b3)
Chain Length:104
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Gene (Uniprot):Ndufb4
Chain IDs:HA (auth: B4), VB (auth: b4)
Chain Length:129
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Gene (Uniprot):Ndufb5
Chain IDs:CA (auth: B5), QB (auth: b5)
Chain Length:189
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Gene (Uniprot):Ndufb6
Chain IDs:DA (auth: B6), RB (auth: b6)
Chain Length:127
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Gene (Uniprot):Ndufb7
Chain IDs:JA (auth: B7), XB (auth: b7)
Chain Length:136
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Gene (Uniprot):Ndufb8
Chain IDs:GA (auth: B8), UB (auth: b8)
Chain Length:186
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Gene (Uniprot):Ndufb9
Chain IDs:IA (auth: B9), WB (auth: b9)
Chain Length:179
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Gene (Uniprot):Ndufb10
Chain IDs:KA (auth: BL), YB (auth: bl)
Chain Length:176
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Gene (Uniprot):Ndufb11
Chain IDs:BA (auth: BM), PB (auth: bm)
Chain Length:151
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Gene (Uniprot):Ndufc1
Chain IDs:X (auth: C1), LB (auth: c1)
Chain Length:76
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C2
Gene (Uniprot):Ndufc2
Chain IDs:Y (auth: C2), MB (auth: c2)
Chain Length:120
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Gene (Uniprot):Ndufs1
Chain IDs:ZC (auth: S1), ED (auth: s1)
Chain Length:716
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Gene (Uniprot):Ndufs2
Chain IDs:C (auth: S2), QA (auth: s2)
Chain Length:463
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
Gene (Uniprot):Ndufs3
Chain IDs:B (auth: S3), PA (auth: s3)
Chain Length:263
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Gene (Uniprot):Ndufs4
Chain IDs:L (auth: S4), ZA (auth: s4)
Chain Length:175
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Gene (Uniprot):Ndufs5
Chain IDs:Z (auth: S5), NB (auth: s5)
Chain Length:106
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Gene (Uniprot):Ndufs6
Chain IDs:M (auth: S6), AB (auth: s6)
Chain Length:116
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Gene (Uniprot):Ndufs7
Chain IDs:AD (auth: S7), FD (auth: s7)
Chain Length:224
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Gene (Uniprot):Ndufs8
Chain IDs:BD (auth: S8), GD (auth: s8)
Chain Length:212
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Gene (Uniprot):Ndufv1
Chain IDs:XC (auth: V1), CD (auth: v1)
Chain Length:457
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Gene (Uniprot):Ndufv2
Chain IDs:YC (auth: V2), DD (auth: v2)
Chain Length:244
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Gene (Uniprot):Ndufv3
Chain IDs:NA (auth: V3), BC (auth: v3)
Chain Length:104
Number of Molecules:2
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MR C ARG modified residue
Primary Citation

Abstact

Mitochondrial electron transport chain (ETC) complexes partition between free complexes and quaternary assemblies known as supercomplexes (SCs). However, the physiological requirement for SCs and the mechanisms regulating their formation remain controversial. Here, we show that genetic perturbations in mammalian ETC complex III (CIII) biogenesis stimulate the formation of a specialized extra-large SC (SC-XL) with a structure of I2+III2, resolved at 3.7 Å by cryoelectron microscopy (cryo-EM). SC-XL formation increases mitochondrial cristae density, reduces CIII reactive oxygen species (ROS), and sustains normal respiration despite a 70% reduction in CIII activity, effectively rescuing CIII deficiency. Consequently, inhibiting SC-XL formation in CIII mutants using the Uqcrc1DEL:E258-D260 contact site mutation leads to respiratory decompensation. Lastly, SC-XL formation promotes fatty acid oxidation (FAO) and protects against ischemic heart failure in mice. Our study uncovers an unexpected plasticity in the mammalian ETC, where structural adaptations mitigate intrinsic perturbations, and suggests that manipulating SC-XL formation is a potential therapeutic strategy for mitochondrial dysfunction.

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Chemical

Disease

Primary Citation of related structures