8UBS image
Deposition Date 2023-09-24
Release Date 2024-10-09
Last Version Date 2025-10-01
Entry Detail
PDB ID:
8UBS
Keywords:
Title:
Crystal structure of NrdJ-1 split intein fusion
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NrdJ-1
Chain IDs:A, B, C, D
Chain Length:151
Number of Molecules:4
Biological Source:marine metagenome
Primary Citation
Programmable protein ligation on cell surfaces.
Nature 645 793 800 (2025)
PMID: 40739351 DOI: 10.1038/s41586-025-09287-2

Abstact

The surface landscapes of cells differ as a function of cell type and are frequently altered in disease contexts1-3. Exploiting such differences is key to many therapeutic strategies and is the basis for developing diagnostic and basic-science tools. State-of-the-art strategies typically target single surface antigens, but each individual receptor rarely defines the specific cell type4,5. The development of programmable molecular systems that integrate multiple cell-surface features to convert on-target inputs to user-defined outputs is therefore highly desirable. Here we describe an autonomous decision-making device driven by proximity-gated protein trans-splicing that allows local generation of an active protein from two otherwise inactive polypeptide fragments. We show that this protein-actuator platform can perform convergent protein ligation on designated cell surfaces, allowing highly selective generation of active proteins, which can either remain physically associated with the cell surface on which they were manufactured or be released into the surrounding milieu. Because of its intrinsic modularity and tunability, we demonstrate that the technology is compatible with different types of input, targeting modality and functional output, allowing for the localized interrogation or manipulation of cellular systems.

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Primary Citation of related structures