8UA7 image
Deposition Date 2023-09-20
Release Date 2024-10-30
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8UA7
Title:
Medusavirus Nucleosome Core Particle
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3
Chain IDs:A, E
Chain Length:196
Number of Molecules:2
Biological Source:Medusavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:125
Number of Molecules:2
Biological Source:Medusavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:C, G
Chain Length:266
Number of Molecules:2
Biological Source:Medusavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B
Chain IDs:D, H
Chain Length:219
Number of Molecules:2
Biological Source:Medusavirus
Polymer Type:polydeoxyribonucleotide
Molecule:WIDOM 601 DNA strand 1
Chain IDs:I
Chain Length:205
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:WIDOM 601 DNA strand 2
Chain IDs:J
Chain Length:205
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Characterization of Medusavirus encoded histones reveals nucleosome-like structures and a unique linker histone.
Nat Commun 15 9138 9138 (2024)
PMID: 39443461 DOI: 10.1038/s41467-024-53364-5

Abstact

The organization of DNA into nucleosomes is a ubiquitous and ancestral feature that was once thought to be exclusive to the eukaryotic domain of life. Intriguingly, several representatives of the Nucleocytoplasmic Large DNA Viruses (NCLDV) encode histone-like proteins that in Melbournevirus were shown to form nucleosome-like particles. Medusavirus medusae (MM), a distantly related giant virus, encodes all four core histone proteins and, unique amongst most giant viruses, a putative acidic protein with two domains resembling eukaryotic linker histone H1. Here, we report the structure of nucleosomes assembled with MM histones and highlight similarities and differences with eukaryotic and Melbournevirus nucleosomes. Our structure provides insight into how variations in histone tail and loop lengths are accommodated within the context of the nucleosome. We show that MM-histones assemble into tri-nucleosome arrays, and that the putative linker histone H1 does not function in chromatin compaction. These findings expand our limited understanding of chromatin organization by virus-encoded histones.

Legend

Protein

Chemical

Disease

Primary Citation of related structures