8U8E image
Entry Detail
PDB ID:
8U8E
EMDB ID:
Title:
Cryo-EM structure of the TREX-2 complex in association with Sub2
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-17
Release Date:
2025-02-05
Method Details:
Experimental Method:
Resolution:
3.33 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nuclear mRNA export factor
Chain IDs:A
Chain Length:497
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:THP1 isoform 1
Chain IDs:B
Chain Length:455
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:26S proteasome complex subunit SEM1
Chain IDs:C
Chain Length:89
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:RNA helicase
Chain IDs:D
Chain Length:446
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structures and mRNP remodeling mechanism of the TREX-2 complex.
Structure 33 566 582.e6 (2025)
PMID: 39862860 DOI: 10.1016/j.str.2024.12.019

Abstact

mRNAs are packaged with proteins into messenger ribonucleoprotein complexes (mRNPs) in the nucleus. mRNP assembly and export are of fundamental importance for all eukaryotic gene expression. Before export to the cytoplasm, mRNPs undergo dynamic remodeling governed by the DEAD-box helicase DDX39B (yeast Sub2). DDX39B/Sub2 primarily functions in the nucleus and leaves the mRNP prior to export through the nuclear pore complex; however, the underlying mechanisms remain elusive. Here, we identify the conserved TREX-2 complex as the long-sought factor that facilitates DDX39B/Sub2 to complete the mRNP remodeling cycle. Our crystallographic and cryoelectron microscopy (cryo-EM) analyses demonstrate that TREX-2 modulates the activities of DDX39B/Sub2 through multiple interactions. Critically, a conserved "trigger loop" from TREX-2 splits the two RecA domains of DDX39B/Sub2 and promotes the removal of DDX39B/Sub2 from mRNP. Our findings suggest that TREX-2 coordinates with DDX39B/Sub2 and the human export receptor NXF1-NXT1 (yeast Mex67-Mtr2) to complete the final steps of nuclear mRNP assembly.

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Primary Citation of related structures