8U8C image
Deposition Date 2023-09-17
Release Date 2025-03-19
Last Version Date 2025-10-01
Entry Detail
PDB ID:
8U8C
Title:
Crystal structure of the TREX-2 complex in complex with the N-terminal motif of Sub2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear mRNA export protein SAC3
Gene (Uniprot):SAC3
Chain IDs:A
Chain Length:497
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear mRNA export protein THP1
Gene (Uniprot):THP1
Chain IDs:B
Chain Length:455
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:26S proteasome complex subunit SEM1
Gene (Uniprot):SEM1
Chain IDs:C
Chain Length:89
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent RNA helicase SUB2
Gene (Uniprot):SUB2
Chain IDs:D
Chain Length:55
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Primary Citation
Structures and mRNP remodeling mechanism of the TREX-2 complex.
Structure 33 566 582.e6 (2025)
PMID: 39862860 DOI: 10.1016/j.str.2024.12.019

Abstact

mRNAs are packaged with proteins into messenger ribonucleoprotein complexes (mRNPs) in the nucleus. mRNP assembly and export are of fundamental importance for all eukaryotic gene expression. Before export to the cytoplasm, mRNPs undergo dynamic remodeling governed by the DEAD-box helicase DDX39B (yeast Sub2). DDX39B/Sub2 primarily functions in the nucleus and leaves the mRNP prior to export through the nuclear pore complex; however, the underlying mechanisms remain elusive. Here, we identify the conserved TREX-2 complex as the long-sought factor that facilitates DDX39B/Sub2 to complete the mRNP remodeling cycle. Our crystallographic and cryoelectron microscopy (cryo-EM) analyses demonstrate that TREX-2 modulates the activities of DDX39B/Sub2 through multiple interactions. Critically, a conserved "trigger loop" from TREX-2 splits the two RecA domains of DDX39B/Sub2 and promotes the removal of DDX39B/Sub2 from mRNP. Our findings suggest that TREX-2 coordinates with DDX39B/Sub2 and the human export receptor NXF1-NXT1 (yeast Mex67-Mtr2) to complete the final steps of nuclear mRNP assembly.

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Primary Citation of related structures
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