8U6X image
Entry Detail
PDB ID:
8U6X
Keywords:
Title:
ATP-dependent DNA ligase Lig E from Neisseria gonorrhoeae
Biological Source:
PDB Version:
Deposition Date:
2023-09-14
Release Date:
2024-01-31
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA ligase
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Neisseria gonorrhoeae MS11
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3')
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*CP*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3')
Chain IDs:C
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
A role for the ATP-dependent DNA ligase lig E of Neisseria gonorrhoeae in biofilm formation.
Bmc Microbiol. 24 29 29 (2024)
PMID: 38245708 DOI: 10.1186/s12866-024-03193-9

Abstact

BACKGROUND The ATP-dependent DNA ligase Lig E is present as an accessory DNA ligase in numerous proteobacterial genomes, including many disease-causing species. Here we have constructed a genomic Lig E knock-out in the obligate human pathogen Neisseria gonorrhoeae and characterised its growth and infection phenotype. RESULTS This demonstrates that N. gonorrhoeae Lig E is a non-essential gene and its deletion does not cause defects in replication or survival of DNA-damaging stressors. Knock-out strains were partially defective in biofilm formation on an artificial surface as well as adhesion to epithelial cells. In addition to in vivo characterisation, we have recombinantly expressed and assayed N. gonorrhoeae Lig E and determined the crystal structure of the enzyme-adenylate engaged with DNA substrate in an open non-catalytic conformation. CONCLUSIONS These findings, coupled with the predicted extracellular/ periplasmic location of Lig E indicates a role in extracellular DNA joining as well as providing insight into the binding dynamics of these minimal DNA ligases.

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Primary Citation of related structures