8U5M image
Deposition Date 2023-09-12
Release Date 2024-02-07
Last Version Date 2024-02-21
Entry Detail
PDB ID:
8U5M
Title:
Structure of Sts-1 HP domain with rebamipide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-associated and SH3 domain-containing protein B
Gene (Uniprot):UBASH3B
Chain IDs:A, B, C, D, E, F
Chain Length:287
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Rebamipide and Derivatives are Potent, Selective Inhibitors of Histidine Phosphatase Activity of the Suppressor of T Cell Receptor Signaling Proteins.
J.Med.Chem. 67 1949 1960 (2024)
PMID: 38252624 DOI: 10.1021/acs.jmedchem.3c01763

Abstact

The suppressor of T cell receptor signaling (Sts) proteins are negative regulators of immune signaling. Genetic inactivation of these proteins leads to significant resistance to infection. From a 590,000 compound high-throughput screen, we identified the 2-(1H)-quinolinone derivative, rebamipide, as a putative inhibitor of Sts phosphatase activity. Rebamipide, and a small library of derivatives, are competitive, selective inhibitors of Sts-1 with IC50 values from low to submicromolar. SAR analysis indicates that the quinolinone, the acid, and the amide moieties are all essential for activity. A crystal structure confirmed the SAR and reveals key interactions between this class of compound and the protein. Although rebamipide has poor cell permeability, we demonstrated that a liposomal preparation can inactivate the phosphatase activity of Sts-1 in cells. These studies demonstrate that Sts-1 enzyme activity can be pharmacologically inactivated and provide foundational tools and insights for the development of immune-enhancing therapies that target the Sts proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures