8U4U image
Entry Detail
PDB ID:
8U4U
Title:
Crystal structure of 53BP1 tandem Tudor domain homodimer engineered with two disulfide bridges
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-11
Release Date:
2023-09-20
Method Details:
Experimental Method:
Resolution:
3.79 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TP53-binding protein 1
Mutations:E1549C, E1567C
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:125
Number of Molecules:10
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An autoinhibited state of 53BP1 revealed by small molecule antagonists and protein engineering.
Nat Commun 14 6091 6091 (2023)
PMID: 37773238 DOI: 10.1038/s41467-023-41821-6

Abstact

The recruitment of 53BP1 to chromatin, mediated by its recognition of histone H4 dimethylated at lysine 20 (H4K20me2), is important for DNA double-strand break repair. Using a series of small molecule antagonists, we demonstrate a conformational equilibrium between an open and a pre-existing lowly populated closed state of 53BP1 in which the H4K20me2 binding surface is buried at the interface between two interacting 53BP1 molecules. In cells, these antagonists inhibit the chromatin recruitment of wild type 53BP1, but do not affect 53BP1 variants unable to access the closed conformation despite preservation of the H4K20me2 binding site. Thus, this inhibition operates by shifting the conformational equilibrium toward the closed state. Our work therefore identifies an auto-associated form of 53BP1-autoinhibited for chromatin binding-that can be stabilized by small molecule ligands encapsulated between two 53BP1 protomers. Such ligands are valuable research tools to study the function of 53BP1 and have the potential to facilitate the development of new drugs for cancer therapy.

Legend

Protein

Chemical

Disease

Primary Citation of related structures