8U44 image
Deposition Date 2023-09-08
Release Date 2024-06-26
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8U44
Title:
CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Influenza A virus (Taxon ID: 464623)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.41 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:C (auth: A), G, K (auth: H)
Chain Length:368
Number of Molecules:3
Biological Source:Influenza A virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:D (auth: B), H (auth: I), L (auth: J)
Chain Length:237
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:05.GC.w2.3C10-H1_SI06 Heavy chain
Chain IDs:A (auth: V), E (auth: S), I (auth: U)
Chain Length:245
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:05.GC.w2.3C10-H1_SI06 Light chain
Chain IDs:B (auth: X), F (auth: T), J (auth: W)
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Germinal centers (GC) are microanatomical lymphoid structures where affinity-matured memory B cells and long-lived bone marrow plasma cells are primarily generated. It is unclear how the maturation of B cells within the GC impacts the breadth and durability of B cell responses to influenza vaccination in humans. We used fine needle aspiration of draining lymph nodes to longitudinally track antigen-specific GC B cell responses to seasonal influenza vaccination. Antigen-specific GC B cells persisted for at least 13 wk after vaccination in two out of seven individuals. Monoclonal antibodies (mAbs) derived from persisting GC B cell clones exhibit enhanced binding affinity and breadth to influenza hemagglutinin (HA) antigens compared with related GC clonotypes isolated earlier in the response. Structural studies of early and late GC-derived mAbs from one clonal lineage in complex with H1 and H5 HAs revealed an altered binding footprint. Our study shows that inducing sustained GC reactions after influenza vaccination in humans supports the maturation of responding B cells.

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Protein

Chemical

Disease

Primary Citation of related structures