8U3C image
Entry Detail
PDB ID:
8U3C
EMDB ID:
Title:
TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 2 (monomer)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-07
Release Date:
2024-05-08
Method Details:
Experimental Method:
Resolution:
2.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Transient receptor potential cation channel subfamily V member 1
Chain IDs:A, B (auth: D)
Chain Length:815
Number of Molecules:2
Biological Source:Rattus norvegicus
Primary Citation
Structural basis of TRPV1 modulation by endogenous bioactive lipids.
Nat.Struct.Mol.Biol. 31 1377 1385 (2024)
PMID: 38698206 DOI: 10.1038/s41594-024-01299-2

Abstact

TRP ion channels are modulated by phosphoinositide lipids, but the underlying structural mechanisms remain unclear. The capsaicin- and heat-activated receptor, TRPV1, has served as a model for deciphering lipid modulation, which is relevant to understanding how pro-algesic agents enhance channel activity in the setting of inflammatory pain. Identification of a pocket within the TRPV1 transmembrane core has provided initial clues as to how phosphoinositide lipids bind to and regulate the channel. Here we show that this regulatory pocket in rat TRPV1 can accommodate diverse lipid species, including the inflammatory lipid lysophosphatidic acid, whose actions are determined by their specific modes of binding. Furthermore, we show that an empty-pocket channel lacking an endogenous phosphoinositide lipid assumes an agonist-like state, even at low temperature, substantiating the concept that phosphoinositide lipids serve as negative TRPV1 modulators whose ejection from the binding pocket is a critical step toward activation by thermal or chemical stimuli.

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