8U39 image
Deposition Date 2023-09-07
Release Date 2024-08-14
Last Version Date 2024-08-14
Entry Detail
PDB ID:
8U39
Keywords:
Title:
Structure of Human Mitochondrial Chaperonin V72I mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:60 kDa heat shock protein, mitochondrial
Gene (Uniprot):HSPD1
Mutations:V72I
Chain IDs:A (auth: G), B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F)
Chain Length:524
Number of Molecules:7
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure and molecular dynamic simulations explain the enhanced stability and ATP activity of the pathological chaperonin mutant.
Structure 32 575 584.e3 (2024)
PMID: 38412855 DOI: 10.1016/j.str.2024.02.001

Abstact

Chaperonins Hsp60s are required for cellular vitality by assisting protein folding in an ATP-dependent mechanism. Although conserved, the human mitochondrial mHsp60 exhibits molecular characteristics distinct from the E. coli GroEL, with different conformational assembly and higher subunit association dynamics, suggesting a different mechanism. We previously found that the pathological mutant mHsp60V72I exhibits enhanced subunit association stability and ATPase activity. To provide structural explanations for the V72I mutational effects, here we determined a cryo-EM structure of mHsp60V72I. Our structural analysis combined with molecular dynamic simulations showed mHsp60V72I with increased inter-subunit interface, binding free energy, and dissociation force, all contributing to its enhanced subunit association stability. The gate to the nucleotide-binding (NB) site in mHsp60V72I mimicked the open conformation in the nucleotide-bound state with an additional open channel leading to the NB site, both promoting the mutant's ATPase activity. Our studies highlight the importance of mHsp60's characteristics in its biological function.

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Primary Citation of related structures