8TXT image
Deposition Date 2023-08-24
Release Date 2024-06-26
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8TXT
Title:
Crystal structure of 05.GC.w13.02 Fab in complex with H5 HA from A/Viet Nam/1203/2004(H5N1)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:A, C, E
Chain Length:334
Number of Molecules:3
Biological Source:Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:B, D, F
Chain Length:177
Number of Molecules:3
Biological Source:Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Polymer Type:polypeptide(L)
Molecule:GC_W13B_B, Fab heavy chain
Chain IDs:G (auth: H), I (auth: G), K (auth: J)
Chain Length:225
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:GC_w13_B, Fab light chain
Chain IDs:H (auth: L), J (auth: I), L (auth: K)
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Germinal centers (GC) are microanatomical lymphoid structures where affinity-matured memory B cells and long-lived bone marrow plasma cells are primarily generated. It is unclear how the maturation of B cells within the GC impacts the breadth and durability of B cell responses to influenza vaccination in humans. We used fine needle aspiration of draining lymph nodes to longitudinally track antigen-specific GC B cell responses to seasonal influenza vaccination. Antigen-specific GC B cells persisted for at least 13 wk after vaccination in two out of seven individuals. Monoclonal antibodies (mAbs) derived from persisting GC B cell clones exhibit enhanced binding affinity and breadth to influenza hemagglutinin (HA) antigens compared with related GC clonotypes isolated earlier in the response. Structural studies of early and late GC-derived mAbs from one clonal lineage in complex with H1 and H5 HAs revealed an altered binding footprint. Our study shows that inducing sustained GC reactions after influenza vaccination in humans supports the maturation of responding B cells.

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Protein

Chemical

Disease

Primary Citation of related structures