8TW2 image
Deposition Date 2023-08-19
Release Date 2024-03-06
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8TW2
Keywords:
VIRUS LIKE PARTICLE
Title:
Acinetobacter phage AP205 T=4 VLP
Biological Source:
Source Organism:
Acinetobacter phage AP205 (Taxon ID: 154784)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8TW2 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein
Chain IDs:A (auth: AA), B (auth: AB), C (auth: AC), D (auth: AD), E (auth: AE), F (auth: AF), G (auth: AG), H (auth: AH), I (auth: AI), J (auth: AJ), K (auth: AK), L (auth: AL), M (auth: AM), N (auth: AN), O (auth: AO), P (auth: AP), Q (auth: AQ), R (auth: AR), S (auth: AS), T (auth: AT), U (auth: AU), V (auth: AV), W (auth: AW), X (auth: AX), Y (auth: AY), Z (auth: AZ), AA (auth: BA), BA (auth: BB), CA (auth: BC), DA (auth: BD), EA (auth: BE), FA (auth: BF), GA (auth: BG), HA (auth: BH), IA (auth: BI), JA (auth: BJ), KA (auth: BK), LA (auth: BL), MA (auth: BM), NA (auth: BN), OA (auth: BO), PA (auth: BP), QA (auth: BQ), RA (auth: BR), SA (auth: BS), TA (auth: BT), UA (auth: BU), VA (auth: BV), WA (auth: BW), XA (auth: BX), YA (auth: BY), ZA (auth: BZ), AB (auth: CA), BB (auth: CB), CB (auth: CC), DB (auth: CD), EB (auth: CE), FB (auth: CF), GB (auth: CG), HB (auth: CH), IB (auth: CI), JB (auth: CJ), KB (auth: CK), LB (auth: CL), MB (auth: CM), NB (auth: CN), OB (auth: CO), PB (auth: CP), QB (auth: CQ), RB (auth: CR), SB (auth: CS), TB (auth: CT), UB (auth: CU), VB (auth: CV), WB (auth: CW), XB (auth: CX), YB (auth: CY), ZB (auth: CZ), AC (auth: DA), BC (auth: DB), CC (auth: DC), DC (auth: DE), EC (auth: DF), FC (auth: DG), GC (auth: DH), HC (auth: DI), IC (auth: DJ), JC (auth: DK), KC (auth: DL), LC (auth: DM), MC (auth: DN), NC (auth: DO), OC (auth: DP), PC (auth: DQ), QC (auth: DR), RC (auth: DS), SC (auth: DT), TC (auth: DU), UC (auth: DV), VC (auth: DW), WC (auth: DX), XC (auth: DY), YC (auth: DZ), ZC (auth: EA), AD (auth: EB), BD (auth: EC), CD (auth: ED), DD (auth: EE), ED (auth: EF), FD (auth: EG), GD (auth: EH), HD (auth: EI), ID (auth: EJ), JD (auth: EK), KD (auth: EL), LD (auth: EM), MD (auth: EN), ND (auth: EO), OD (auth: EP), PD (auth: EQ), QD (auth: ER), RD (auth: ES), SD (auth: ET), TD (auth: EU), UD (auth: EV), VD (auth: EW), WD (auth: EX), XD (auth: EY), YD (auth: EZ), ZD (auth: FA), AE (auth: FB), BE (auth: FC), CE (auth: FD), DE (auth: FE), EE (auth: FF), FE (auth: FG), GE (auth: FH), HE (auth: FI), IE (auth: FJ), JE (auth: FK), KE (auth: FL), LE (auth: FM), ME (auth: FN), NE (auth: FO), OE (auth: FP), PE (auth: FQ), QE (auth: FR), RE (auth: FS), SE (auth: FT), TE (auth: FU), UE (auth: FV), VE (auth: FW), WE (auth: FX), XE (auth: FY), YE (auth: FZ), ZE (auth: GA), AF (auth: GB), BF (auth: GC), CF (auth: GD), DF (auth: GE), EF (auth: GF), FF (auth: GG), GF (auth: GH), HF (auth: GI), IF (auth: GK), JF (auth: GL), KF (auth: GM), LF (auth: GN), MF (auth: GO), NF (auth: GP), OF (auth: GQ), PF (auth: GR), QF (auth: GS), RF (auth: GT), SF (auth: GU), TF (auth: GV), UF (auth: GW), VF (auth: GX), WF (auth: GY), XF (auth: GZ), YF (auth: HA), ZF (auth: HB), AG (auth: HC), BG (auth: HD), CG (auth: HE), DG (auth: HF), EG (auth: HG), FG (auth: HI), GG (auth: HJ), HG (auth: HK), IG (auth: HL), JG (auth: HM), KG (auth: HN), LG (auth: HO), MG (auth: HP), NG (auth: HQ), OG (auth: HR), PG (auth: HS), QG (auth: HT), RG (auth: HU), SG (auth: HV), TG (auth: HW), UG (auth: HX), VG (auth: HY), WG (auth: HZ), XG (auth: IA), YG (auth: IB), ZG (auth: IC), AH (auth: ID), BH (auth: IE), CH (auth: IF), DH (auth: IG), EH (auth: IH), FH (auth: II), GH (auth: IJ), HH (auth: IK), IH (auth: IL), JH (auth: IM), KH (auth: IN), LH (auth: IO), MH (auth: IP), NH (auth: IQ), OH (auth: IR), PH (auth: IS), QH (auth: IT), RH (auth: IU), SH (auth: IV), TH (auth: IW), UH (auth: IX), VH (auth: IZ), WH (auth: JA), XH (auth: JB), YH (auth: JC), ZH (auth: JD), AI (auth: JE), BI (auth: JF), CI (auth: JG), DI (auth: JH), EI (auth: JI), FI (auth: JJ)
Chain Length:129
Number of Molecules:240
Biological Source:Acinetobacter phage AP205
UniProt ID:Q9AZ42 Pfam ID:PF22169
Ligand Molecules
NA
Primary Citation
Structural basis of Acinetobacter type IV pili targeting by an RNA virus.
Nat Commun 15 2746 2746 (2024)
PMID: 38553443 DOI: 10.1038/s41467-024-47119-5

Abstact

Acinetobacters pose a significant threat to human health, especially those with weakened immune systems. Type IV pili of acinetobacters play crucial roles in virulence and antibiotic resistance. Single-stranded RNA bacteriophages target the bacterial retractile pili, including type IV. Our study delves into the interaction between Acinetobacter phage AP205 and type IV pili. Using cryo-electron microscopy, we solve structures of the AP205 virion with an asymmetric dimer of maturation proteins, the native Acinetobacter type IV pili bearing a distinct post-translational pilin cleavage, and the pili-bound AP205 showing its maturation proteins adapted to pilin modifications, allowing each phage to bind to one or two pili. Leveraging these results, we develop a 20-kilodalton AP205-derived protein scaffold targeting type IV pili in situ, with potential for research and diagnostics.

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Primary Citation of related structures
8TW2