8TW0 image
Entry Detail
PDB ID:
8TW0
Title:
Crystal Structure of a synthetic ABC heterotrimeric Collagen-like Peptide at 1.53 A
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-08-18
Release Date:
2024-05-29
Method Details:
Experimental Method:
Resolution:
1.53 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Collagen Mimetic Peptide A
Chain IDs:A
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Collagen Mimetic Peptide B
Chain IDs:B
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Collagen Mimetic Peptide C
Chain IDs:C
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Heterotrimeric collagen helix with high specificity of assembly results in a rapid rate of folding.
Nat.Chem. 16 1698 1704 (2024)
PMID: 39009792 DOI: 10.1038/s41557-024-01573-2

Abstact

The most abundant natural collagens form heterotrimeric triple helices. Synthetic mimics of collagen heterotrimers have been found to fold slowly, even compared to the already slow rates of homotrimeric helices. These prolonged folding rates are not understood. Here we compare the stabilities, specificities and folding rates of three heterotrimeric collagen mimics designed through a computationally assisted approach. The crystal structure of one ABC-type heterotrimer verified a well-controlled composition and register and elucidated the geometry of pairwise cation-π and axial and lateral salt bridges in the assembly. This collagen heterotrimer folds much faster (hours versus days) than comparable, well-designed systems. Circular dichroism and NMR data suggest the folding is frustrated by unproductive, competing heterotrimer species and these species must unwind before refolding into the thermodynamically favoured assembly. The heterotrimeric collagen folding rate is inhibited by the introduction of preformed competing triple-helical assemblies, which suggests that slow heterotrimer folding kinetics are dominated by the frustration of the energy landscape caused by competing triple helices.

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