8TRQ image
Entry Detail
PDB ID:
8TRQ
Keywords:
Title:
T cell recognition of citrullinated vimentin peptide presented by HLA-DR4
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-08-10
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DR alpha chain
Chain IDs:A
Chain Length:189
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DRB1 beta chain
Chain IDs:B
Chain Length:199
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Vimentin
Chain IDs:C
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:A07 TCR alpha chain
Chain IDs:D
Chain Length:209
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:A07 TCR beta chain
Chain IDs:E
Chain Length:245
Number of Molecules:1
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CIR C ARG modified residue
Ligand Molecules
Primary Citation
The molecular basis underlying T cell specificity towards citrullinated epitopes presented by HLA-DR4.
Nat Commun 15 6201 6201 (2024)
PMID: 39043656 DOI: 10.1038/s41467-024-50511-w

Abstact

CD4+ T cells recognising citrullinated self-epitopes presented by HLA-DRB1 bearing the shared susceptibility epitope (SE) are implicated in rheumatoid arthritis (RA). However, the underlying T cell receptor (TCR) determinants of epitope specificity towards distinct citrullinated peptide antigens, including vimentin-64cit59-71 and α-enolase-15cit10-22 remain unclear. Using HLA-DR4-tetramers, we examine the T cell repertoire in HLA-DR4 transgenic mice and observe biased TRAV6 TCR gene usage across these two citrullinated epitopes which matches with TCR bias previously observed towards the fibrinogen β-74cit69-81 epitope. Moreover, shared TRAV26-1 gene usage is evident in four α-enolase-15cit10-22 reactive T cells in three human samples. Crystal structures of mouse TRAV6+ and human TRAV26-1+ TCR-HLA-DR4 complexes presenting vimentin-64cit59-71 and α-enolase-15cit10-22, respectively, show three-way interactions between the TCR, SE, citrulline, and the basis for the biased selection of TRAV genes. Position 2 of the citrullinated epitope is a key determinant underpinning TCR specificity. Accordingly, we provide a molecular basis of TCR specificity towards citrullinated epitopes.

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Primary Citation of related structures