8TR3 image
Deposition Date 2023-08-09
Release Date 2024-06-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8TR3
Title:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.74 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CNE40 SOSIP Envelope glycoprotein gp120
Gene (Uniprot):env
Mutagens:CNE40 SOSIP mutations
Chain IDs:A, E (auth: C), I (auth: E)
Chain Length:489
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CNE40 SOSIP Transmembrane protein gp41
Gene (Uniprot):env
Mutagens:CNE40 SOSIP mutations
Chain IDs:B, F (auth: D), J (auth: F)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:HmAb64 Fv heavy chain
Chain IDs:C (auth: H), G (auth: I), K (auth: J)
Chain Length:124
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HmAb64 Fv light chain
Chain IDs:D (auth: L), H (auth: M), L (auth: N)
Chain Length:109
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains.
Nat Commun 15 4301 4301 (2024)
PMID: 38773089 DOI: 10.1038/s41467-024-48514-8

Abstact

The vaccine elicitation of HIV tier-2-neutralization antibodies has been a challenge. Here, we report the isolation and characterization of a CD4-binding site (CD4bs) specific monoclonal antibody, HmAb64, from a human volunteer immunized with a polyvalent DNA prime-protein boost HIV vaccine. HmAb64 is derived from heavy chain variable germline gene IGHV1-18 and light chain germline gene IGKV1-39. It has a third heavy chain complementarity-determining region (CDR H3) of 15 amino acids. On a cross-clade panel of 208 HIV-1 pseudo-virus strains, HmAb64 neutralized 20 (10%), including tier-2 strains from clades B, BC, C, and G. The cryo-EM structure of the antigen-binding fragment of HmAb64 in complex with a CNE40 SOSIP trimer revealed details of its recognition; HmAb64 uses both heavy and light CDR3s to recognize the CD4-binding loop, a critical component of the CD4bs. This study demonstrates that a gp120-based vaccine can elicit antibodies capable of tier 2-HIV neutralization.

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Primary Citation of related structures
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