8TOB image
Deposition Date 2023-08-03
Release Date 2024-03-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8TOB
Keywords:
Title:
Acinetobacter GP16 Type IV pilus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fimbrial protein
Gene (Uniprot):F902_00908
Chain IDs:A (auth: GA), B (auth: HA), C (auth: IA), D (auth: JA), E (auth: KA), F (auth: LA), G (auth: MA), H (auth: NA), I (auth: OA), J (auth: PA), K (auth: QA), L (auth: RA), M (auth: SA), N (auth: TA), O (auth: UA), P (auth: VA), Q (auth: AA), R (auth: BA), S (auth: CA), T (auth: DA), U (auth: EA), V (auth: FA)
Chain Length:70
Number of Molecules:22
Biological Source:Acinetobacter genomosp. 16BJ
Polymer Type:polypeptide(L)
Molecule:Fimbrial protein
Gene (Uniprot):F902_00908
Chain IDs:W (auth: GB), X (auth: HB), Y (auth: IB), Z (auth: JB), AA (auth: KB), BA (auth: LB), CA (auth: MB), DA (auth: NB), EA (auth: OB), FA (auth: PB), GA (auth: QB), HA (auth: RB), IA (auth: SB), JA (auth: TB), KA (auth: UB), LA (auth: VB), MA (auth: AB), NA (auth: BB), OA (auth: CB), PA (auth: DB), QA (auth: EB), RA (auth: FB)
Chain Length:69
Number of Molecules:22
Biological Source:Acinetobacter genomosp. 16BJ
Ligand Molecules
Primary Citation
Structural basis of Acinetobacter type IV pili targeting by an RNA virus.
Nat Commun 15 2746 2746 (2024)
PMID: 38553443 DOI: 10.1038/s41467-024-47119-5

Abstact

Acinetobacters pose a significant threat to human health, especially those with weakened immune systems. Type IV pili of acinetobacters play crucial roles in virulence and antibiotic resistance. Single-stranded RNA bacteriophages target the bacterial retractile pili, including type IV. Our study delves into the interaction between Acinetobacter phage AP205 and type IV pili. Using cryo-electron microscopy, we solve structures of the AP205 virion with an asymmetric dimer of maturation proteins, the native Acinetobacter type IV pili bearing a distinct post-translational pilin cleavage, and the pili-bound AP205 showing its maturation proteins adapted to pilin modifications, allowing each phage to bind to one or two pili. Leveraging these results, we develop a 20-kilodalton AP205-derived protein scaffold targeting type IV pili in situ, with potential for research and diagnostics.

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Primary Citation of related structures