8TLT image
Entry Detail
PDB ID:
8TLT
EMDB ID:
Title:
Cryo-EM structure of Rev1(deltaN)-Polzeta-DNA-dCTP complex
Biological Source:
PDB Version:
Deposition Date:
2023-07-27
Release Date:
2024-05-15
Method Details:
Experimental Method:
Resolution:
2.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA polymerase zeta catalytic subunit
Chain IDs:A
Chain Length:1538
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA repair protein REV1
Chain IDs:F (auth: B)
Chain Length:985
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA polymerase zeta processivity subunit
Chain IDs:B (auth: D), C (auth: E)
Chain Length:245
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA polymerase delta small subunit
Chain IDs:D (auth: F)
Chain Length:494
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA polymerase delta subunit 3
Chain IDs:E (auth: G)
Chain Length:350
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*CP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3')
Chain IDs:G (auth: P)
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*TP*AP*AP*TP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*GP*AP*AP*T)-3')
Chain IDs:H (auth: T)
Chain Length:19
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Cryo-EM structure of the Rev1-Pol zeta holocomplex reveals the mechanism of their cooperativity in translesion DNA synthesis.
Nat.Struct.Mol.Biol. 31 1394 1403 (2024)
PMID: 38720088 DOI: 10.1038/s41594-024-01302-w

Abstact

Rev1-Polζ-dependent translesion synthesis (TLS) of DNA is crucial for maintaining genome integrity. To elucidate the mechanism by which the two polymerases cooperate in TLS, we determined the cryogenic electron microscopic structure of the Saccharomyces cerevisiae Rev1-Polζ holocomplex in the act of DNA synthesis (3.53 Å). We discovered that a composite N-helix-BRCT module in Rev1 is the keystone of Rev1-Polζ cooperativity, interacting directly with the DNA template-primer and with the Rev3 catalytic subunit of Polζ. The module is positioned akin to the polymerase-associated domain in Y-family TLS polymerases and is set ideally to interact with PCNA. We delineate the full extent of interactions that the carboxy-terminal domain of Rev1 makes with Polζ and identify potential new druggable sites to suppress chemoresistance from first-line chemotherapeutics. Collectively, our results provide fundamental new insights into the mechanism of cooperativity between Rev1 and Polζ in TLS.

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