8TID image
Deposition Date 2023-07-19
Release Date 2023-09-27
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8TID
Title:
Combined linker domain of N-DRC and associated proteins Tetrahymena
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 1/2 N-terminal domain-containing protein
Gene (Uniprot):TTHERM_01345750
Chain IDs:A
Chain Length:826
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil protein, putative
Gene (Uniprot):TTHERM_00971830
Chain IDs:B
Chain Length:506
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:LRRC48 protein
Gene (Uniprot):TTHERM_00316370
Chain IDs:C
Chain Length:575
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Growth-arrest-specific microtubule-binding protein
Gene (Uniprot):TTHERM_00649240
Chain IDs:D
Chain Length:472
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Growth-arrest-specific microtubule-binding protein
Gene (Uniprot):TTHERM_00857910
Chain IDs:E
Chain Length:468
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Flagellar associated protein
Gene (Uniprot):TTHERM_00697450
Chain IDs:F
Chain Length:461
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Kinase domain protein
Gene (Uniprot):TTHERM_01220370
Chain IDs:G
Chain Length:195
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil lobo-like protein, putative
Gene (Uniprot):TTHERM_00473320
Chain IDs:H
Chain Length:852
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:EF-hand calcium-binding domain protein
Gene (Uniprot):TTHERM_001232262
Chain IDs:I, Z (auth: i)
Chain Length:185
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 9
Gene (Uniprot):TTHERM_00625950
Chain IDs:J
Chain Length:372
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 10
Gene (Uniprot):TTHERM_00535929
Chain IDs:K
Chain Length:434
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:AAA family ATPase CDC48 subfamily protein
Gene (Uniprot):TTHERM_00151820
Chain IDs:L
Chain Length:862
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 91
Gene (Uniprot):TTHERM_00578560
Chain IDs:M
Chain Length:644
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Flagella associated protein
Gene (Uniprot):TTHERM_00227220
Chain IDs:N, AA (auth: n)
Chain Length:963
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil protein, putative
Gene (Uniprot):TTHERM_00391400
Chain IDs:O, BA (auth: o)
Chain Length:893
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:DUF4201 domain-containing protein
Gene (Uniprot):CFAP184
Chain IDs:P
Chain Length:794
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Calmodulin 7-2
Gene (Uniprot):TTHERM_00549500
Chain IDs:Q, R
Chain Length:202
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil domain-containing protein 153
Gene (Uniprot):DRC12
Chain IDs:S, CA (auth: s)
Chain Length:187
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Flagellar associated protein
Gene (Uniprot):CFAP263
Chain IDs:T
Chain Length:361
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:L-shape (Unknown-protein)
Chain IDs:U, V
Chain Length:597
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:WD40 domain protein
Gene (Uniprot):CFAP57C
Chain IDs:W
Chain Length:1308
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:EF hand protein
Gene (Uniprot):CFAP337A
Chain IDs:X (auth: Z)
Chain Length:1079
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:CFAP20
Gene (Uniprot):TTHERM_00418580
Chain IDs:Y (auth: g)
Chain Length:195
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:WD40 domain protein
Gene (Uniprot):CFAP57A
Chain IDs:DA (auth: w)
Chain Length:1308
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Ligand Molecules
Primary Citation
Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun 14 5741 5741 (2023)
PMID: 37714832 DOI: 10.1038/s41467-023-41480-7

Abstact

Cilia are hairlike protrusions that project from the surface of eukaryotic cells and play key roles in cell signaling and motility. Ciliary motility is regulated by the conserved nexin-dynein regulatory complex (N-DRC), which links adjacent doublet microtubules and regulates and coordinates the activity of outer doublet complexes. Despite its critical role in cilia motility, the assembly and molecular basis of the regulatory mechanism are poorly understood. Here, using cryo-electron microscopy in conjunction with biochemical cross-linking and integrative modeling, we localize 12 DRC subunits in the N-DRC structure of Tetrahymena thermophila. We also find that the CCDC96/113 complex is in close contact with the DRC9/10 in the linker region. In addition, we reveal that the N-DRC is associated with a network of coiled-coil proteins that most likely mediates N-DRC regulatory activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures