8TH8 image
Deposition Date 2023-07-14
Release Date 2023-09-20
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8TH8
Title:
Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
7.40 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 1/2 N-terminal domain-containing protein
Gene (Uniprot):TTHERM_01345750
Chain IDs:A
Chain Length:826
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil protein, putative
Gene (Uniprot):TTHERM_00971830
Chain IDs:B
Chain Length:506
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:LRRC48 protein
Gene (Uniprot):TTHERM_00316370
Chain IDs:C
Chain Length:575
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Growth-arrest-specific microtubule-binding protein
Gene (Uniprot):TTHERM_00649240
Chain IDs:D
Chain Length:472
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Growth-arrest-specific microtubule-binding protein
Gene (Uniprot):TTHERM_00857910
Chain IDs:E
Chain Length:468
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Flagellar associated protein
Gene (Uniprot):TTHERM_00697450
Chain IDs:F
Chain Length:461
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Kinase domain protein
Gene (Uniprot):TTHERM_01220370
Chain IDs:G
Chain Length:345
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil lobo-like protein, putative
Gene (Uniprot):TTHERM_00473320
Chain IDs:H
Chain Length:852
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:EF-hand calcium-binding domain protein
Gene (Uniprot):TTHERM_001232262
Chain IDs:I, Q (auth: i)
Chain Length:185
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 9
Gene (Uniprot):TTHERM_00625950
Chain IDs:J
Chain Length:372
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Dynein regulatory complex protein 10
Gene (Uniprot):TTHERM_00535929
Chain IDs:K
Chain Length:434
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:AAA family ATPase CDC48 subfamily protein
Gene (Uniprot):TTHERM_00151820
Chain IDs:L
Chain Length:862
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:DUF4201 domain-containing protein
Gene (Uniprot):CFAP184
Chain IDs:M (auth: P)
Chain Length:794
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Calmodulin 7-2
Gene (Uniprot):TTHERM_00549500
Chain IDs:N (auth: Q), O (auth: R)
Chain Length:202
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:Coiled-coil domain-containing protein 153
Gene (Uniprot):DRC12
Chain IDs:P (auth: S), R (auth: s)
Chain Length:187
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Primary Citation
Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun 14 5741 5741 (2023)
PMID: 37714832 DOI: 10.1038/s41467-023-41480-7

Abstact

Cilia are hairlike protrusions that project from the surface of eukaryotic cells and play key roles in cell signaling and motility. Ciliary motility is regulated by the conserved nexin-dynein regulatory complex (N-DRC), which links adjacent doublet microtubules and regulates and coordinates the activity of outer doublet complexes. Despite its critical role in cilia motility, the assembly and molecular basis of the regulatory mechanism are poorly understood. Here, using cryo-electron microscopy in conjunction with biochemical cross-linking and integrative modeling, we localize 12 DRC subunits in the N-DRC structure of Tetrahymena thermophila. We also find that the CCDC96/113 complex is in close contact with the DRC9/10 in the linker region. In addition, we reveal that the N-DRC is associated with a network of coiled-coil proteins that most likely mediates N-DRC regulatory activity.

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Primary Citation of related structures