8TH5 image
Deposition Date 2023-07-13
Release Date 2024-03-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
8TH5
Title:
Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein P13L mutant
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.62 Å
R-Value Free:
0.33
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras GTPase-activating protein-binding protein 1
Gene (Uniprot):G3BP1
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:139
Number of Molecules:10
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoprotein
Gene (Uniprot):N
Mutagens:P13L
Chain IDs:K, L (auth: P), M (auth: L), N (auth: M), O, P (auth: Q), Q (auth: N)
Chain Length:25
Number of Molecules:7
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation

Abstact

G3BP1/2 are paralogous proteins that promote stress granule formation in response to cellular stresses, including viral infection. The nucleocapsid (N) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) inhibits stress granule assembly and interacts with G3BP1/2 via an ITFG motif, including residue F17, in the N protein. Prior studies examining the impact of the G3PB1-N interaction on SARS-CoV-2 replication have produced inconsistent findings, and the role of this interaction in pathogenesis is unknown. Here, we use structural and biochemical analyses to define the residues required for G3BP1-N interaction and structure-guided mutagenesis to selectively disrupt this interaction. We find that N-F17A mutation causes highly specific loss of interaction with G3BP1/2. SARS-CoV-2 N-F17A fails to inhibit stress granule assembly in cells, has decreased viral replication, and causes decreased pathology in vivo. Further mechanistic studies indicate that the N-F17-mediated G3BP1-N interaction promotes infection by limiting sequestration of viral genomic RNA (gRNA) into stress granules.

Legend

Protein

Chemical

Disease

Primary Citation of related structures