8TF2 image
Deposition Date 2023-07-07
Release Date 2024-01-10
Last Version Date 2024-02-14
Entry Detail
PDB ID:
8TF2
Title:
Wildtype rabbit TRPV5 into nanodiscs in Apo state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential cation channel subfamily V member 5
Gene (Uniprot):Trpv5
Chain IDs:A, B, C, D
Chain Length:739
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Primary Citation
Structural mechanism of TRPV5 inhibition by econazole.
Structure 32 148 156.e5 (2024)
PMID: 38141613 DOI: 10.1016/j.str.2023.11.012

Abstact

The calcium-selective TRPV5 channel activated by phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] is involved in calcium homeostasis. Recently, cryoelectron microscopy (cryo-EM) provided molecular details of TRPV5 modulation by exogenous and endogenous molecules. However, the details of TRPV5 inhibition by the antifungal agent econazole (ECN) remain elusive due to the low resolution of the currently available structure. In this study, we employ cryo-EM to comprehensively examine how the ECN inhibits TRPV5. By combining our structural findings with site-directed mutagenesis, calcium measurements, electrophysiology, and molecular dynamics simulations, we determined that residues F472 and L475 on the S4 helix, along with residue W495 on the S5 helix, collectively constitute the ECN-binding site. Additionally, the structure of TRPV5 in the presence of ECN and PI(4,5)P2, which does not show the bound activator, reveals a potential inhibition mechanism in which ECN competes with PI(4,5)P2, preventing the latter from binding, and ultimately pore closure.

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Primary Citation of related structures