8TAS image
Deposition Date 2023-06-27
Release Date 2024-09-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8TAS
Keywords:
Title:
PRC2 monomer bound to nucleosome
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polycomb protein SUZ12
Gene (Uniprot):SUZ12
Chain IDs:A (auth: D)
Chain Length:619
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase EZH2
Gene (Uniprot):EZH2
Chain IDs:B (auth: E)
Chain Length:753
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polycomb protein EED
Gene (Uniprot):EED
Chain IDs:C (auth: G)
Chain Length:441
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (226-MER)
Chain IDs:E (auth: H)
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:D (auth: I), L (auth: W)
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:F (auth: J), M (auth: X)
Chain Length:106
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone-binding protein RBBP4
Gene (Uniprot):RBBP4
Chain IDs:N (auth: O)
Chain Length:425
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Chain IDs:G (auth: R), J (auth: U)
Chain Length:133
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Chain IDs:H (auth: S), K (auth: V)
Chain Length:123
Number of Molecules:2
Biological Source:Xenopus laevis
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (226-MER)
Chain IDs:I (auth: T)
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Zinc finger protein AEBP2
Gene (Uniprot):AEBP2
Chain IDs:O (auth: Y)
Chain Length:303
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Activation of automethylated PRC2 by dimerization on chromatin.
Mol.Cell 84 3885 3898.e8 (2024)
PMID: 39303719 DOI: 10.1016/j.molcel.2024.08.025

Abstact

Polycomb repressive complex 2 (PRC2) is an epigenetic regulator that trimethylates lysine 27 of histone 3 (H3K27me3) and is essential for embryonic development and cellular differentiation. H3K27me3 is associated with transcriptionally repressed chromatin and is established when PRC2 is allosterically activated upon methyl-lysine binding by the regulatory subunit EED. Automethylation of the catalytic subunit enhancer of zeste homolog 2 (EZH2) stimulates its activity by an unknown mechanism. Here, we show that human PRC2 forms a dimer on chromatin in which an inactive, automethylated PRC2 protomer is the allosteric activator of a second PRC2 that is poised to methylate H3 of a substrate nucleosome. Functional assays support our model of allosteric trans-autoactivation via EED, suggesting a previously unknown mechanism mediating context-dependent activation of PRC2. Our work showcases the molecular mechanism of auto-modification-coupled dimerization in the regulation of chromatin-modifying complexes.

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Primary Citation of related structures