8T7R image
Deposition Date 2023-06-21
Release Date 2024-12-25
Last Version Date 2026-01-14
Entry Detail
PDB ID:
8T7R
Keywords:
Title:
Crystal structure of human leukocyte antigen A*0101 in complex with the Fab of alloreactive antibody E07
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Cytomegalovirus (Taxon ID: 10358)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.84 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:peptide
Chain IDs:D (auth: 0), I (auth: 1), N (auth: 2), S (auth: 3), X (auth: 4), CA (auth: 5), HA (auth: 6), MA (auth: 7), RA (auth: 8)
Chain Length:9
Number of Molecules:9
Biological Source:Cytomegalovirus
Polymer Type:polypeptide(L)
Molecule:Light chain from antibody JTK191b E07
Chain IDs:A, F (auth: E), K (auth: I), P (auth: M), U (auth: Q), Z (auth: U), EA (auth: Y), JA (auth: c), OA (auth: g), SA (auth: k), UA (auth: o), WA (auth: s)
Chain Length:214
Number of Molecules:12
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab heavy chain from antibody JTK191b E07
Chain IDs:B, G (auth: F), L (auth: J), Q (auth: N), V (auth: R), AA (auth: V), FA (auth: Z), KA (auth: d), PA (auth: h), TA (auth: l), VA (auth: p), XA (auth: t)
Chain Length:240
Number of Molecules:12
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen (Fragment)
Gene (Uniprot):HLA-A
Chain IDs:C, H (auth: G), M (auth: K), R (auth: O), W (auth: S), BA (auth: W), GA (auth: a), LA (auth: e), QA (auth: i)
Chain Length:214
Number of Molecules:9
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:E (auth: D), J (auth: H), O (auth: L), T (auth: P), Y (auth: T), DA (auth: X), IA (auth: b), NA (auth: f)
Chain Length:240
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Topography of the HLA-A protein enforces shared and convergent immunodominant B cell and antibody alloresponses in transplant recipients.
Immunity 58 3040 3060.e12 (2025)
PMID: 41289995 DOI: 10.1016/j.immuni.2025.10.014

Abstact

Donor-specific antibody responses against human leukocyte antigen (HLA) proteins mismatched between transplant donors and recipients cause allograft loss, yet the structural HLA epitopes targeted by alloreactive B cells and antibodies remain largely unresolved. We profiled the HLA-A∗01:01-specific B cell response in the transplanted kidney and blood of a recipient undergoing antibody-mediated rejection and identified immunodominant B cell and antibody responses that emerged early in the alloimmune response. These responses were focused on topographically exposed mismatched HLA residues located in the α helices along the peptide-binding groove of HLA-A∗01:01. We demonstrated that the anti-HLA-A∗01:01 B cell alloresponse converged and was maintained on this same immunodominant HLA subregion, which comprises only 20% of the HLA molecule, in a diverse group of HLA-A∗01:01-mismatched transplant recipients. Thus, the B cell and antibody alloresponses appear tightly focused on a topographically defined region on the HLA-A∗01:01 crown that is conserved across individuals expressing distinct constellations of self-HLA-A.

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Protein

Chemical

Disease

Primary Citation of related structures
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