8T6L image
Deposition Date 2023-06-16
Release Date 2024-03-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8T6L
Title:
Cryo-EM structure of rat cardiac sodium channel NaV1.5 with batrachotoxin analog BTX-B
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sodium channel protein type 5 subunit alpha,Green fluorescent protein
Gene (Uniprot):Scn5a, GFP
Mutations:A33T,G214D
Chain IDs:A
Chain Length:1874
Number of Molecules:1
Biological Source:Rattus norvegicus, Aequorea victoria
Primary Citation
Dual receptor-sites reveal the structural basis for hyperactivation of sodium channels by poison-dart toxin batrachotoxin.
Nat Commun 15 2306 2306 (2024)
PMID: 38485923 DOI: 10.1038/s41467-024-45958-w

Abstact

The poison dart toxin batrachotoxin is exceptional for its high potency and toxicity, and for its multifaceted modification of the function of voltage-gated sodium channels. By using cryogenic electron microscopy, we identify two homologous, but nonidentical receptor sites that simultaneously bind two molecules of toxin, one at the interface between Domains I and IV, and the other at the interface between Domains III and IV of the cardiac sodium channel. Together, these two bound toxin molecules stabilize α/π helical conformation in the S6 segments that gate the pore, and one of the bound BTX-B molecules interacts with the crucial Lys1421 residue that is essential for sodium conductance and selectivity via an apparent water-bridged hydrogen bond. Overall, our structure provides insight into batrachotoxin's potency, efficacy, and multifaceted functional effects on voltage-gated sodium channels via a dual receptor site mechanism.

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Primary Citation of related structures