8T5C image
Deposition Date 2023-06-13
Release Date 2024-01-03
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8T5C
Title:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoprotein G1
Gene (Uniprot):GPC
Chain IDs:A (auth: B), C (auth: A), E (auth: C)
Chain Length:194
Number of Molecules:3
Biological Source:Lassa virus Josiah
Polymer Type:polypeptide(L)
Molecule:D5 nanobody
Chain IDs:G (auth: D)
Chain Length:120
Number of Molecules:1
Biological Source:Camelus bactrianus
Polymer Type:polypeptide(L)
Molecule:8.11G Heavy Chain
Chain IDs:H, J (auth: E)
Chain Length:120
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:8.11G Light Chain
Chain IDs:I (auth: L), K (auth: I)
Chain Length:109
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Glycoprotein G2
Gene (Uniprot):GPC
Chain IDs:B (auth: b), D (auth: a), F (auth: c)
Chain Length:194
Number of Molecules:3
Biological Source:Lassa virus Josiah
Ligand Molecules
Primary Citation
Cleavage-intermediate Lassa virus trimer elicits neutralizing responses, identifies neutralizing nanobodies, and reveals an apex-situated site-of-vulnerability.
Nat Commun 15 285 285 (2024)
PMID: 38177144 DOI: 10.1038/s41467-023-44534-y

Abstact

Lassa virus (LASV) infection is expanding outside its traditionally endemic areas in West Africa, posing a pandemic biothreat. LASV-neutralizing antibodies, moreover, have proven difficult to elicit. To gain insight into LASV neutralization, here we develop a prefusion-stabilized LASV glycoprotein trimer (GPC), pan it against phage libraries comprising single-domain antibodies (nanobodies) from shark and camel, and identify one, D5, which neutralizes LASV. Cryo-EM analyses reveal D5 to recognize a cleavage-dependent site-of-vulnerability at the trimer apex. The recognized site appears specific to GPC intermediates, with protomers lacking full cleavage between GP1 and GP2 subunits. Guinea pig immunizations with the prefusion-stabilized cleavage-intermediate LASV GPC, first as trimer and then as a nanoparticle, induce neutralizing responses, targeting multiple epitopes including that of D5; we identify a neutralizing antibody (GP23) from the immunized guinea pigs. Collectively, our findings define a prefusion-stabilized GPC trimer, reveal an apex-situated site-of-vulnerability, and demonstrate elicitation of LASV-neutralizing responses by a cleavage-intermediate LASV trimer.

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Primary Citation of related structures