8T08 image
Deposition Date 2023-05-31
Release Date 2023-09-06
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8T08
Keywords:
Title:
Preholo-Proteasome from Pre1-1 Pre4-1 Double Mutant
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-1
Gene (Uniprot):SCL1
Chain IDs:A, R
Chain Length:205
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-2
Gene (Uniprot):PRE8
Chain IDs:B, S
Chain Length:250
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-3
Gene (Uniprot):PRE9
Chain IDs:C, T
Chain Length:287
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-4
Gene (Uniprot):PRE6
Chain IDs:D, U
Chain Length:254
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-5
Gene (Uniprot):PUP2
Chain IDs:E, V
Chain Length:260
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-6
Gene (Uniprot):PRE5
Chain IDs:F, W
Chain Length:276
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-7
Gene (Uniprot):PRE10
Chain IDs:G, X
Chain Length:267
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome maturation factor UMP1
Gene (Uniprot):UMP1
Chain IDs:H, Y
Chain Length:148
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-2
Gene (Uniprot):PUP1
Chain IDs:I, Z
Chain Length:261
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-3
Gene (Uniprot):PUP3
Chain IDs:J, AA (auth: a)
Chain Length:205
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-4
Gene (Uniprot):PRE1
Chain IDs:K, BA (auth: b)
Chain Length:250
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-5
Gene (Uniprot):PRE2
Chain IDs:L, CA (auth: c)
Chain Length:287
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-6
Gene (Uniprot):PRE7
Chain IDs:M, DA (auth: d)
Chain Length:254
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-1
Gene (Uniprot):PRE3
Chain IDs:N, EA (auth: e)
Chain Length:260
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome chaperone 1
Gene (Uniprot):PBA1
Chain IDs:O, FA (auth: f)
Chain Length:276
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome assembly chaperone 2
Gene (Uniprot):ADD66
Chain IDs:P, GA (auth: g)
Chain Length:267
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-7
Gene (Uniprot):PRE4
Mutations:Deletion of 15 C-terminal residues 252-266 (WDFAKDIKGYGTQKI)
Chain IDs:Q, HA (auth: h)
Chain Length:148
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Ligand Molecules
Primary Citation
Structure of the preholoproteasome reveals late steps in proteasome core particle biogenesis.
Nat.Struct.Mol.Biol. 30 1516 1524 (2023)
PMID: 37653242 DOI: 10.1038/s41594-023-01081-w

Abstact

Assembly of the proteasome's core particle (CP), a barrel-shaped chamber of four stacked rings, requires five chaperones and five subunit propeptides. Fusion of two half-CP precursors yields a complete structure but remains immature until active site maturation. Here, using Saccharomyces cerevisiae, we report a high-resolution cryogenic electron microscopy structure of preholoproteasome, a post-fusion assembly intermediate. Our data reveal how CP midline-spanning interactions induce local changes in structure, facilitating maturation. Unexpectedly, we find that cleavage may not be sufficient for propeptide release, as residual interactions with chaperones such as Ump1 hold them in place. We evaluated previous models proposing that dynamic conformational changes in chaperones drive CP fusion and autocatalytic activation by comparing preholoproteasome to pre-fusion intermediates. Instead, the data suggest a scaffolding role for the chaperones Ump1 and Pba1/Pba2. Our data clarify key aspects of CP assembly, suggest that undiscovered mechanisms exist to explain CP fusion/activation, and have relevance for diseases of defective CP biogenesis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures